High Performance Computing Systems and Applications

I Keynote Presentations.- 1 Making Computer Design a Science Instead of an Art.- 2 Scalable Shared Memory and Shared Memory Clustering.- 3 High-Performance Computational Grids.- 4 High Performance Computing and Computational Chemistry in Canada—Quo Vadis.- 5 Scalable Shared-Memory Multiprocessing: The Future of High-Performance Computing.- 6 Challenges of Future High-End Computing.- II Computational Physics.- 7 Parallel Performance of a Code Using Multidimensional FFTs (Invited Paper).- 8 Object-Oriented Scientific Programming with Fortran 90 (Invited Paper).- 9 Alternating Direction Implicit Methods on Distributed and Shared Memory Parallel Computers (Invited Paper).- 10 Simulating Galaxy Formation on SMPs.- III Database Systems.- 11 Data Parallelism in Java.- 12 A Comparative Study of Soft Real-Time Transaction Scheduling Policies in Parallel Database Systems.- 13 An Age-Threshold Algorithm for Garbage Collection in Log-Structured Arrays and File Systems.- 14 Thinking Big in a Small World — Efficient Query Execution on Small-scale SMPs.- IV Parallel I/O Issues.- 15 Speeding Up Automatic Parallel I/O Performance Optimization in Panda.- 16 Software Caching in A Parallel I/O Runtime System to Support Irregular Applications.- 17 HIPPI-6400—Designing for Speed.- V Performance Issues.- 18 RSD - Resource and Service Description.- 19 An Examination of the Performance of Two Electromagnetic Simulations on a Beowulf-Class Computer.- 20 Managing Divisible Loadon Partitionable Networks.- VI Computational Chemistry.- 21 NWChem Molecular Dynamics Simulation (Invited Paper).- 22 Using Gaussian Geminal Functions in Molecular Calculations: Integral Evaluation (Invited Presentation).- 23 The Development of Parallel GAMESS (Invited Presentation).- 24 Applications/TechnologyPush/Pull: Building Computational Infrastructure (Invited Presentation).- VII NUMA Architectures.- 25 A Virtual Cache Scheme for Improving Cache-Affinity on Multiprogrammed Shared Memory Multiprocessors.- 26 Stable Performance for cc-NUMA using First-Touch Page Placement and Reactive Proxies.- 27 A Comparative Study of Cache-Coherent Nonuniform Memory Access Systems.- 28 Parallel Computation of the Diameter of a Graph.- VIII Computational Biology.- 29 Calculation of Solvation Free Energies.- 30 Molecular Docking With a View: The Integration of a Monte Carlo Docking Program into a Virtual Reality Environment.- 31 Structural Ribonucleic Acid Motifs Identification And Classification.- 32 Computational Protein Folding.- IX Applications.- 33 Distributed Computing Over High-Speed Local Area Networks.- 34 Fast and Efficient Parallel Matrix Computations on a Linear Array with a Reconfigurable Pipelined Optical Bus System.- 35 Development of Parallel, Adaptive Finite Element Implementations for Modeling Two-Phase Oil/Water Flow.- 36 Parallel Solution Alternatives for Sparse Triangular Systems in Interior Point Methods.- X General Session.- 37 Managing Long Linked Lists Using Lock-Free Techniques.- 38 Single Stepping in Concurrent Executions.- 39 Adaptive Parallelism on a Network of Workstations.- 40 A New Family of Ring-Bisection Networks and Routing Algorithms.