Bacterial Pangenomics
Humana Press Inc. (Verlag)
978-1-4939-5547-3 (ISBN)
Authoritative and easily accessible, Bacterial Pangenomics: Methods and Protocols will serve as a field guide for both qualified bacterial genomics investigators who want to update their technical knowledge, for less experienced researchers who want to start working with bacterial genomics and pangenomics, as well as serving as a manual and supplemental textbook for graduate students of genomics and bioinformatics.
Pulsed Field Gel Electrophoresis and Genome Size Estimates.- Comparative Analyses of Extrachromosomal Bacterial Replicons, Identification of Chromids and Experimental Evaluation of their Indispensability.- Choice of Next Generation Sequencin Pipelines.- The Pyrosequencing Protocol for Bacterial Genomes.- Bacterial Metabarcoding by 16S rRNA Gene Ion Torrent Amplicon Sequencing.- The Ilumina-Solexa Sequencing Protocol for Bacterial Genomes.- High-Throughput Phenomics.- Comparative Analysis of Gene Expression: Uncovering Expression Conservation and Divergence between Salmonella enterica serovar Typhimurium strains LT2 and 14028S.- Raw Sequence Data and Quality Control.- Methods for Assembling Reads and Producing Contigs.- Mapping Contigs Using CONTIGuator.- Gene Calling and Bacterial Genome Annotation with BG7.- Defining Orthologs and Pangenome Size Metrics.- Robust Identification of Orthologues and Paralogues for Microbial Pan-Genomics Using GET_HOMOLOGUES: A Case Study of pIncA/C Plasmids.- Genome-Scale Metabolic Networks Reconstruction.- From Pangenome to Phanphenome and Back.- Genome-Wide Detection of Selection and Other Evolutionary Forces.- The Integrated Microbial Genome Resource of Analysis.
Erscheinungsdatum | 02.10.2016 |
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Reihe/Serie | Methods in Molecular Biology ; 1231 |
Zusatzinfo | 42 Illustrations, color; 17 Illustrations, black and white; X, 298 p. 59 illus., 42 illus. in color. |
Verlagsort | Totowa, NJ |
Sprache | englisch |
Maße | 178 x 254 mm |
Themenwelt | Naturwissenschaften ► Biologie ► Mikrobiologie / Immunologie |
Technik ► Umwelttechnik / Biotechnologie | |
Schlagworte | Bacterial genomes • contigs • Electrophoresis • Metabolic Network • microbial genome • pangenome • phenomics |
ISBN-10 | 1-4939-5547-0 / 1493955470 |
ISBN-13 | 978-1-4939-5547-3 / 9781493955473 |
Zustand | Neuware |
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