DNA-Protein Interactions

 A DNA pull-down assay with diversity forms of competitor for detecting or evaluating protein-DNA interactions.- Enhanced yeast one-hybrid assays to study protein-DNA interactions.- Chromatin Immunoprecipitation on Fixed Tissues and Cell Lines.- The ChIP-exo method to identify genomic locations of DNA-binding Proteins at Near Single Base-Pair Resolution.- ChIP-seq Protocol for invVitro Cell Differentiation Systems.- Profiling Accessible Chromatin and Nucleosomes in the Mammalian Genome.- Dissecting Locus-Specific Chromatin Interactions by CRISPR Capture.- CUT&RUN to Profile Chromatin-Bound Proteins in Primary Mouse Neural Progenitor Cells.- Easy Hi-C: A Low Input Method for Capturing Genome Organization.- Single Molecule Imaging of DNA Protein Interactions Using DNA Curtains.- Quantifying the Binding and Target-Search Kinetics of Transcriptional Regulatory Factors by Live-Cell Single-Molecule Tracking.- Preparation of Recombinant Histones and Widom 601 DNA for Reconstitution of Nucleosome Core Particles.- Nucleosome Core Particle Reconstitution with Recombinant Histones and Widom 601 DNA.- Rapid Single-Pot Assembly of Modular Chromatin Proteins for Epigenetic Engineering.- Mapping Transcription Regulation with Run-on and Sequencing Data Using The Web-Based tfTarget Gateway.- In embryo Gene Reporter Assays for Evaluation of Cis-Regulatory Regions.- In situ Hybridization as a Method to Examine Gene Regulatory Activity in vivo.- In situ Hybridization as a Method to Examine Gene Regulatory Activity in vivo.- Fishing for developmental regulatory regions: Zebrafish tissue-specific ATAC-seq.