High-Throughput Plant Phenotyping

Preface...Table of Contents...Contributors...
Part I HTP Protocols for Plants Growing Under Controlled Conditions
1.High Throughput Screening to Examine the Dynamic of Stay Green by an Imaging System Daniel Padilla-Chacón and Cecilia B. Peña Valdivia
2.An Automated High-Throughput Phenotyping System for Marchantia polymorphaKarina Medina-Jimenez, Mario A. Arteaga-Vazquez, and Argelia Lorence
3.A Novel High-Throughput Phenotyping Hydroponic System for Nitrogen Deficiency Studies in Arabidopsis thalianaLucia M. Acosta-Gamboa, Zachary C. Campbell, Fei Gao, Benjamin Babst, and Argelia Lorence
4.Camelina sativa High-Throughput Phenotyping Under Normal and Salt Conditions Using a Plant Phenomics PlatformEmilio Vello, John Aguirre, Yang Shao, and Thomas Bureau
5.A Straightforward High-Throughput Aboveground Phenotyping Platform for Small to Medium-Sized PlantsDenise Caldwell and Anjali S. Iyer-Pascuzzi
6.Wireless Fixed Camera Network for Greenhouse-Based Plant PhenotypingNadia Shakoor and Todd C. Mockler
7.Experimental Design for Controlled Environment High-Throughput Plant PhenotypingJennifer L. Clarke, Yumou Qiu, and James C. Schnable
Part II Novel Algorithms for HTP
8.High-Throughput Extraction of Seed Traits Using Image Acquisition and AnalysisChongyuan Zhang and Sindhuja Sankaran
9.ColorQuant: A High-Throughput Technique to Extract and Quantify Color Phenotypes from Plant ImagesMao Li, Margaret H. Frank, and Zoë Migicovsky
10.Using Cameras for Precise Measurement of Two-Dimensional Plant Features: CASS   Amy Tabb, Germán A. Holguín, and Rachel Naegele
Part III Molecular Plant Imaging
11.Positron Emission Tomography (PET) for Molecular Plant Imaging Sergey Komarov and Yuan-Chuan Tai 
12.Phenotyping Complex Plant Structures with a Large Format Industrial Scale High Resolution X-Ray Tomography InstrumentKeith E. Duncan and Christopher N. Topp
Part IV HTP Protocols for Plants Growing Under Field Conditions
13.Challenges for a Massive Implementation of Phenomics in Plant Breeding ProgramsGustavo A. Lobos, Félix Estrada, Alejandro del Pozo, Sebastián Romero-Bravo, Cesar A. Astudillo, and Freddy Mora-Poblete
14.Designing Experiments for Physiological PhenomicsAddie Thompson, Michael Kantar, and Katy Rainey
15.Design Considerations for In-Field Measurement of Plant Architecture Traits Using Ground-Based PlatformsPiyush Pandey and Sierra Young
16.Design and Construction of Unmanned Ground Vehicles for Sub-Canopy Plant PhenotypingAdam Stager, Herbert G. Tanner, and Erin Sparks
17.Nighttime Chlorophyll Fluorescence Imaging of Dark-Adapted Plants Using a Robotic Field Phenotyping PlatformMaria Newcomb and Nadia Shakoor
Part V Molecular, Metabolomics, Network Analysis, and Quantitative Genetic Analysis of HTP Data
18.A Method for Rapid and Reliable Molecular Detection of Drought-Response Genes in Sorghum bicolor (L.) Moench Roots Juan B. Fontanet-Manzaneque, David Blasco-Escámez, Damiano Martignago, Andrés Rico-Medina, and Ana I. Caño-Delgado
19.High-Throughput Profiling of Metabolic Phenotypes Using High-Resolution GC-MSNishikant Wase, Nathan Abshire, and Toshihiro Obata20.Gene Co-Expression Network Analysis and Linking Modules to Phenotyping Response in PlantsQian Du, Malachy Campbell, Huihui Yu, Kan Liu, Harkamal Walia, Qi Zhang, and Chi Zhang
21.Statistical Methods for the Quantitative Genetic Analysis of High-Throughput Phenotyping DataGota Morota, Diego Jarquin, Malachy T. Campbell, and Hiroyoshi Iwata
Subject Index List...