Plant Transposable Elements
Springer-Verlag New York Inc.
978-1-0716-1136-4 (ISBN)
Authoritative and cutting-edge, Plant Transposable Elements: Methods and Protocols aims to provide web-lab and dry-lab methodologies targeted at various levels from beginner to experienced.
A Predictive Approach to Infer the Activity and Natural Variation of Retrotransposon Families in Plants.- In silico Identification of Stress Associated Transposable Elements in Arabidopsis thaliana using Public Transcriptome Data.- A Practical Guide on Computational Tools and Databases for Transposable Elements in Plants.- A Tutorial of EDTA: Extensive de-novo TE Annotator.- Mining of Miniature Transposable Elements in Brassica species at BrassicaTED.- Genome-wide Identification of Miniature Inverted-Repeat Transposable Elements by Targeted High-Throughput Sequencing.- Identification of Extrachromosomal Circular Forms of Active Transposable Elements Using Mobilome-Seq.- Identification of Active Transposable Elements in Plants: The mobilome-seq Approach.- High-throughput Profiling of Extrachromosomal Linear DNAs of Long Terminal Repeat Retrotransposons by ALE-seq.- Bioinformatics Analysis Guides to LTR Retrotransposon-Derived Extrachromosomal Linear DNAs Identified by ALE-seq.- Determination of TE insertion Positions using Transposon Display.- Detection of Transposition Events from Next-Generation Sequencing Data.- Rapid Detection of Transposon-Induced Genome Rearrangements.- Detection of Transposable Element Insertions in Arabidopsis Using Sequence Capture.- Efficient Detection of Transposable Element Insertion Polymorphisms Between Genomes Using Short-Read Sequencing Data.- Quantitative Measurement of Transposon Copy Number using the Droplet Digital PCRDetecting Signatures of TE Polymorphisms in Short-read Sequencing Data.- How to Activate Heat-responsible Retrotransposon ONSEN in Brassicaceae Species.- Measurement of Genetic Mobility Using a Transposon-Based Marker System In Sorghum.- Sequence-specific Amplified Polymorphism (SSAP) and Sequence Characterized Amplified Region (SCAR) Markers in Zea mays.- Analysis of Plant DNA Methylation Profiles using R.- Arabidopsis thaliana Mature Endosperm Dissection and Isolation of Seed Tissue Genomic DNA.- Transposon-Based Tagging in Silico using FastPCR Software.- Bamboo Transposon Research: Current Status and Perspectives.
Erscheinungsdatum | 03.05.2022 |
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Reihe/Serie | Methods in Molecular Biology ; 2250 |
Zusatzinfo | 46 Illustrations, color; 15 Illustrations, black and white; XV, 272 p. 61 illus., 46 illus. in color. |
Verlagsort | New York, NY |
Sprache | englisch |
Maße | 178 x 254 mm |
Themenwelt | Naturwissenschaften ► Biologie ► Botanik |
Naturwissenschaften ► Biologie ► Genetik / Molekularbiologie | |
Schlagworte | eukaryotic genomes • Gene function • Mobile elements • sequencing • Transposon study |
ISBN-10 | 1-0716-1136-4 / 1071611364 |
ISBN-13 | 978-1-0716-1136-4 / 9781071611364 |
Zustand | Neuware |
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