Plant Transposable Elements

A Predictive Approach to Infer the Activity and Natural Variation of Retrotransposon Families in Plants.- In silico Identification of Stress Associated Transposable Elements in Arabidopsis thaliana using Public Transcriptome Data.- A Practical Guide on Computational Tools and Databases for Transposable Elements in Plants.- A Tutorial of EDTA: Extensive de-novo TE Annotator.- Mining of Miniature Transposable Elements in Brassica species at BrassicaTED.- Genome-wide Identification of Miniature Inverted-Repeat Transposable Elements by Targeted High-Throughput Sequencing.- Identification of Extrachromosomal Circular Forms of Active Transposable Elements Using Mobilome-Seq.- Identification of Active Transposable Elements in Plants: The mobilome-seq Approach.- High-throughput Profiling of Extrachromosomal Linear DNAs of Long Terminal Repeat Retrotransposons by ALE-seq.- Bioinformatics Analysis Guides to LTR Retrotransposon-Derived Extrachromosomal Linear DNAs Identified by ALE-seq.- Determination of TE insertion Positions using Transposon Display.- Detection of Transposition Events from Next-Generation Sequencing Data.- Rapid Detection of Transposon-Induced Genome Rearrangements.- Detection of Transposable Element Insertions in Arabidopsis Using Sequence Capture.- Efficient Detection of Transposable Element Insertion Polymorphisms Between Genomes Using Short-Read Sequencing Data.- Quantitative Measurement of Transposon Copy Number using the Droplet Digital PCRDetecting Signatures of TE Polymorphisms in Short-read Sequencing Data.- How to Activate Heat-responsible Retrotransposon ONSEN in Brassicaceae Species.- Measurement of Genetic Mobility Using a Transposon-Based Marker System In Sorghum.- Sequence-specific Amplified Polymorphism (SSAP) and Sequence Characterized Amplified Region (SCAR) Markers in Zea mays.- Analysis of Plant DNA Methylation Profiles using R.- Arabidopsis thaliana Mature Endosperm Dissection and Isolation of Seed Tissue Genomic DNA.- Transposon-Based Tagging in Silico using FastPCR Software.- Bamboo Transposon Research: Current Status and Perspectives.