Plant Circadian Networks

Measurement of Luciferase Rhythms.- Online Period Estimation and Determination of Rhythmicity in Circadian Data, using the BioDare Data Infrastructure.- Global profiling of the circadian transcriptome using microarrays.- ChIP-Seq analysis of histone modifications at the core of the Arabidopsis circadian clock.- Quantitative transcriptome analysis using RNA-seq.- Rapid and parallel quantification of small and large RNA species.- The RIP per case – identification of RNA binding protein targets by RNA immunoprecipitation.- A protocol for visual analysis of alternative splicing in RNA-Seq data using Integrated Genome Browser.- AthaMap web tools for the analysis of transcriptional and post-transcriptional gene expression regulation in Arabidopsis thaliana.- Analysis of mRNA translation states in Arabidopsis over the diurnal cycle by polysome microarray.- Immunoprecipitation-based analysis of protein-protein interactions.- Comparative Phosphoproteomics to Identify Targets of the Clock-Relevant Casein Kinase 1 in C. reinhardtii Flagella.- Pulsed induction of circadian clock genes in Arabidopsis seedlings.- The use of fluorescent proteins to analyze circadian rhythms.- Measuring circadian oscillations of cytosolic-free calcium in Arabidopsis thaliana.- Circadian life without micronutrients: effects of altered micronutrient supply on clock function in Arabidopsis.- Assessing redox state and reactive oxygen species in circadian rhythmicity.- Circadian regulation of plant immunity to pathogens.- Determination of photoperiodic flowering time control in Arabidopsis and barley.- The perennial clock is an essential timer for seasonal growth events and cold hardiness.- Monitoring seasonal bud set, bud burst and cold hardiness in Populus.- Transformation and Measurement of Bioluminescence Rhythms in the Moss Physcomitrella patens.- Modeling and Simulating the Arabidopsis thaliana Circadian Clock UsingXPP-AUTO.