An Introductory Handbook of Bayesian Thinking

Dr. Stephen Loftus is an Analyst in Research & Development for the Atlanta Braves. Prior to this, he held academic positions at Randolph-Macon College and Sweet Briar College. In his experience in academia and industry, Dr. Loftus has spent a great deal of time studying and developing Bayesian models for a variety of projects. These highly collaborative projects range from analysis in baseball to studies in numerical ecology. In developing these models, he found himself, on many occasions, needing to explain not only the decisions made in making these models, but also the rationale behind the Bayesian philosophy of statistics to individuals with diverse mathematical backgrounds.

1. Probability and Random Variables
2. Probability Distributions, Expected Value, and Variance
3. Common Probability Distributions
4. Conditional Probability and Bayes' Rule
5. Finding and Using Distributions of Data
6. Marginal and Conditional Distributions
7. The Bayesian Switch
8. A Brief Review of R
9. Single Parameter Bayesian Inference
10. Multi-Parameter Inference
11. Gibbs Sampling in R
12. Bayesian Linear Regression
13. Bayesian Binary Regression
14. Probabilistic Clustering
15. Dealing with Non-conjugate Priors
16. Models for Count Data
17. Testing Hypotheses with Bayes
18. Bayesian Inference Beyond This Book

Appendix A: Matrix Form of Bayesian Linear Regression
Appendix B: Multivariate Clustering
Appendix C: List of Probability Distributions
Appendix D: Solutions to Practice Problems