Veterinary Microbiology

D. Scott McVey, DVM, PhD, DACVM, is Past President of ACVM and the Associate Dean and Director of the Iowa/Nebraska Professional Program for Veterinary Medicine, University of Nebraska Lincoln, Lincoln, Nebraska.

Melissa Kennedy, DVM, PhD, DACVM, is Past President of ACVM and Associate Professor and Director of the Biomedical and Diagnostic Sciences Department, College of Veterinary Medicine at University of Tennessee, in Knoxville, Tennessee.

Rebecca Wilkes, DVM, PhD, DACVM, is an Associate Professor of Molecular Diagnostics in the Comparative Pathobiology Department and Section Head for molecular and virology sections at the Animal Disease Diagnostic Laboratory at Purdue University in West Lafayette, Indiana.

M.M. Chengappa, BVSc, MVSc, MS, PhD, DACVM, is Past President of ACVM and a University Distinguished Professor in the Department of the Diagnostic Medicine/Pathobiology , College of Veterinary Medicine at Kansas State University in Manhattan, Kansas.

List of Contributors xii

Acknowledgments xviii

Preface xix

About the Companion Website xx

Part I Introduction 1

1 Microbial Infections of Animals 3
D. Scott McVey, Melissa Kennedy, and Charles Czuprynski

2 Basic Bacteriology 11
Tiruvoor G. Nagaraja

3 Basic Mycology 29
Charles Czuprynski and M.M. Chengappa

4 Basic Virology 35
Mohamed A. Abouelkhair and Melissa Kennedy

Part II Bacteriology 41

5 Family Enterobacteriaceae 43
Rodney A. Moxley

6 Enterobacteriaceae: Escherichia 56
Rodney A. Moxley

7 Enterobacteriaceae: Salmonella 75
Rodney A. Moxley

8 Family Yersiniaceae 88
Rodney A. Moxley

9 Enterobacteriaceae: Shigella 100
Rodney A. Moxley

10 Pasteurellaceae: Avibacterium, Bibersteinia, Mannheimia, and Pasteurella 108
William B. Crosby and Amelia R. Woolums

11 Pasteurellaceae: Actinobacillus 118
Bradley W. Fenwick and Andrew N. Rycroft

12 Pasteurellaceae: Glaesserella, Haemophilus, and Histophilus 129
Amelia R. Woolums

13 Bordetella 136
Bradley W. Fenwick

14 Brucella 151
S.C. Olsen and P. Boggiatto

15 Burkholderia mallei and Burkholderia pseudomallei 162
Sanjeev Narayanan

16 Francisella tularensis 168
Marilynn A. Larson and Peter C. Iwen

17 Moraxella 176
John Dustin Loy and Gabriele Maier

18 Pseudomonas 183
Deepti Pillai

19 Taylorella 187
Megan E. Jacob

20 Spirilla I: Borrelia 192
Roman R. Ganta

21 Spiral-Curved Organisms II: Brachyspira and Lawsonia 196
Gerald E. Duhamel

22 Spiral-Curved Organisms III: Campylobacter and Arcobacter 207
Gerald E. Duhamel

23 Spirilla IV: Helicobacter– the Spiral Microorganisms of the Gastrointestinal Tract and Liver 219
Megan E. Jacob

24 Spirochetes V: Leptospira 225
Sreekumari Rajeev

25 Staphylococcus 231
George C. Stewart

26 Streptococcus and Enterococcus 240
George C. Stewart

27 Trueperella 252
Tiruvoor G. Nagaraja

28 Bacillus 257
George C. Stewart

29 Corynebacterium 265
Tiruvoor G. Nagaraja

30 Erysipelothrix 273
Timothy Frana and Axel Neubauer

31 Listeria 280
Sanjeev Narayanan

32 Rhodococcus 286
Seth P. Harris and Joshua Daniels

33 Gram-Negative, Non-Spore-Forming Anaerobes 294
Tiruvoor G. Nagaraja

34 Clostridium 309
Iman Mehdizadeh Gohari and John F. Prescott

35 Filamentous Bacteria: Actinomyces, Nocardia, Dermatophilus, and Streptobacillus 335
Megan E. Jacob

36 Mycobacteria 345
Raul G. Barletta and David J. Steffen

37 Chlamydiaceae: Chlamydia 360
Roman R. Ganta

38 Mollicutes 364
Bonto Faburay and D. Scott McVey

39 Rickettsiaceae and Coxiellaceae: Rickettsia and Coxiella 377
Roman R. Ganta

40 Anaplasmataceae: Anaplasma 381
Roman R. Ganta

41 Anaplasmataceae: Ehrlichia and Neorickettsia 386
Roman R. Ganta

42 Bartonellaceae 392
Kathryn E. Reif

Part III Fungi 405

43 Yeasts: Cryptococcus, Malassezia, and Candida 407
Lisa M. Pohlman and M.M. Chengappa

44 Dermatophytes 418
M.M. Chengappa and Lisa M. Pohlman

45 Agents of Subcutaneous Mycoses 425
Lisa M. Pohlman and M.M. Chengappa

46 Agents of Systemic Mycoses 433
Lisa M. Pohlman and M.M. Chengappa

Part IV Viruses 449

47 Parvoviridae 451
Rebecca P. Wilkes

48 Circoviridae 469
Pablo Piñeyro and Sheela Ramamoorthy

49 Asfarviridae and Iridoviridae 478
Melissa Kennedy, Gustavo Delhon, D. Scott McVey, Hiep Vu, and Manuel Borca

50 Papillomaviridae and Polyomaviridae 484
Mohamed A. Abouelkhair and Melissa Kennedy

51 Adenoviridae 489
Yunjeong Kim and Kyeong-Ok Chang

52 Herpesviridae 496
Rebecca P. Wilkes and Jobin Kattoor

53 Poxviridae 522
Gustavo Delhon

54 Picornaviridae 533
Luis L. Rodriguez and Jonathan Arzt

55 Caliciviridae 543
Mohamed A. Abouelkhair and Melissa Kennedy

56 Togaviridae and Flaviviridae 552
Christopher C.L. Chase

57 Orthomyxoviridae 573
Wenjun Ma

58 Bunyavirales 589
William C. Wilson, Dana Mitzel, Lee W. Cohnstaedt, Leela Noronha, Barbara S. Drolet, and D. Scott McVey

59 Paramyxoviridae, Pneumoviridae, Filoviridae, and Bornaviridae 596
Stefan Niewiesk and Michael Oglesbee

60 Rhabdoviridae 609
Susan M. Moore and D. Scott McVey

61 Coronaviridae and Tobaniviridae 622
Udeni B.R. Balasuriya, Yun Young Go, and Mariano Carossino

62 Arteriviridae and Roniviridae 659
Udeni B. R. Balasuriya, Mariano Carossino, and Yun Young Go

63 Reoviridae 679
Barbara S. Drolet, Bethany L. McGregor, Lee W. Cohnstaedt, William C. Wilson, and D. Scott McVey

64 Birnaviridae 693
Melissa Kennedy and Donald L. Reynolds

65 Retroviridae 698
Jean-Pierre Frossard

66 Transmissible Spongiform Encephalopathies 728
Jürgen A. Richt and Nicholas Haley

Part V Control of Infectious Diseases 743

67 Immune Responses to Infectious Agents 745
Laurel J. Gershwin

68 Laboratory Diagnosis 760
D. Scott McVey, Bruce Brodersen, Duan Loy, and John Dustin Loy

69 Antimicrobial Chemotherapy and Antimicrobial Resistance 771
Michael D. Apley

70 Vaccines 803
D. Scott McVey, Jishu Shi, and Donald Reynolds

71 Disinfection and Sterilization 813
John Dustin Loy, D. Scott McVey, and M.M. Chengappa

72 Epidemiology of Infectious Diseases 818
Natalia Cernicchiaro, Ana R.S. Oliveira, and Lee W. Cohnstaedt

Index 829