Viral Metagenomics

Exploring the Archaeal Virosphere by Metagenomics.- From Whole-Genome Shotgun Sequencing to Viral Community Profiling: The ViromeScan Tool.- Freshwater Viral Metagenome Analyses Targeting dsDNA Viruses.- Discovery and Identification of Viruses Infecting Oomycetes.- Metagenomic Analyses of Viruses in the Orchid Mycorrhizal Interaction using Improved Assemble Tools.- Determination of the Mycovirome of a Necrotrophic Fungus.- From Metagenomics to Ecogenomics: NGS-Based Approaches for Discovery of New Circular DNA Single-Stranded Viral Species.- SARS-CoV-2 Detection and Genome Sequencing in Urban Wastewaters.- Enrichment, Sequencing, and Identification of DNA Bacteriophages from Fecal Samples.- Exploration and Retrieval of Virus-Related Molecular Data using ExTaxsI: The Monkeypox Use Case.- Optimized Recovery of Viral DNA and RNA from Blood Plasma for Viral Metagenomics.- Targeted Whole Genome Sequencing of the Capripoxvirus Genome from Clinical Tissue Samples and Lyophilized Vaccine Batches.- Viromes of Plants Determined by High-Throughput Sequencing of Virus Derived siRNAs.- Validation of High-Throughput Sequencing (HTS) for Routine Detection of Citrus Viruses and Viroids.- Identification of DNA Viruses in Ancient DNA from Herbarium Samples.- The Oxford Nanopore MinION as a Versatile Technology for the Diagnosis and Characterization of Emerging Plant Viruses.- Detection of Plant Viruses using Nanopore Sequencing Based Metagenomic Approach.- Application of Nanopore-Based Sequencing to Identify Virus Infections in Woody Plants.- Distribution of Small RNAs Along Transposable Elements in Vitis vinifera during Somatic Embryogenesis.