R-Loops

lt;p>1. Direct R-Loop Visualization on Genomic DNA by Native Automated Electron Microscopy

            Henriette Stoy, Joel Luethi, Fabienne Roessler, Johannes Riemann, Andres Kaech, and Massimo Lopes

2. Detection of R-Loop Structures by Immunofluorescence Using the S9.6 Monoclonal Antibody

            Konstantina Skourti-Stathaki

3. R-Loop Detection in Bacteria

            Émilie Vlachos-Breton and Marc Drolet

4. Detection of R-Loops by In Vivo and In Vitro Cytosine Deamination in Saccharomyces cerevisiae

            Juan C. Cañas, Andrés Aguilera, and Belén Gómez-González

5. Identification of RNA-DNA Hybrids Associated with R-Loops at the IgH Switch Sequence in Activated B Cells

            Junghyun Lim, Brice Laffleur, Uttiya Basu, and Kefei Yu

6. Locus-Specific Analysis of Replication Dynamics and Detection of DNA:RNA Hybrids by Immuno Electron Microscopy

            Henriette Stoy, Kevin Lang, Houra Merrikh, and Massimo Lopes

7. RNase H1, the Gold Standard for R-Loop Detection

            Susana M. Cerritelli, Kiran Sakhuja, and Robert J. Crouch

8. RNase H1 Hybrid-Binding Domain-Based Tools for Cellular Biology Studies of DNA-RNA Hybrids in Mammalian Cells

            Sónia Silva, Cristina Guillén-Mendoza, and Andrés Aguilera

9. Detection and Quantification of RNA Modifications on RNA/DNA Hybrids Using SID-UPLC-MS/MS

            Marta Starczak, Abdulkadir Abakir, Alexey Ruzov, and Daniel Gackowski

10. DNA:RNA Hybrids at Telomeres in Budding Yeast

            Carolin B. Wagner and Brian Luke

11. Detection of TERRA R-Loops at Human Telomeres

            Galina Glousker, Rita Valador Fernandes, Marianna Feretzaki, and Joachim Lingner

12. R-Loops and Mitochondrial DNA Metabolism

            Ian J. Holt

13. Highly-Purified Top1-Bound DNA Fragments

            Jessica Marinello and Giovanni Capranico

14. R-Loop Immunoprecipitation: A Method to Detect R-Loop Interacting Factors In Vivo

            Chiara Beghè and Natalia Gromak

15. Studies on Protein-RNA:DNA Hybrid Interactions by Microscale Thermophoresis (MST)

16. Studying R-Loop Recognizing Proteins Using Single-Molecule DNA Curtain Technique and Electrophoretic Mobility Shift Assay

            Na Young Cheon and Ja Yil Lee

17. Immunostaining and Protein Pull-Down of Methyl-5-Cytosine-Marked RNA:DNA Hybrids

            Haibo Yang and Li Lan

18. In Vitro Binding of GADD45A to RNA:DNA Hybrids

            Khelifa Arab and Christof Niehrs

19. Proximity Ligation Assay for Detection of R-Loop Complexes upon DNA Damage

            Adele Alagia, Ruth F. Ketley, and Monika Gullerova

20. Biochemical Analysis of RNA-DNA Hybrid and R-Loop Unwinding via Motor Proteins

            Arijit Dutta, Youngho Kwon, and Patrick Sung

21. Topology of RNA:DNA Hybrids and R-Loops in Yeast

            Yathish Jagadheesh Achar and Marco Foiani

22. Detecting and Mapping N6-Methyladenosine on RNA/DNA Hybrids

            Abdulkadir Abakir, Fahad Alenezi, and Alexey Ruzov

23. Genome-Wide Native R-Loop Profiling by R-Loop Cleavage Under Targets and Tagmentation (R-Loop CUT&Tag)

            Honghong Wang, Conghui Li, and Kaiwei Liang

24. Mapping R-Loops Using Catalytically Inactive RNaseH1 (R-ChIP)

            Xuan Zhang, Yajing Hao, and Xiang-Dong Fu

25. Targeted Nuclease Approaches for Mapping Native R-Loops

            Phillip Wulfridge, Qingqing Yan, and Kavitha Sarma

26. Quantitative DNA-RNA Immunoprecipitation-Sequencing with Spike-Ins

            Magdalena P. Crossley and Karlene A. Cimprich

27. DNA:RNA Immunoprecipitation from S. pombe Cells for qPCR and Genome-Wide Sequencing

            Laetitia Vachez, Camille Teste, and Vincent Vanoosthuyse

28. Genome-Wide Analysis of DNA-RNA Hybrids in Yeast by DRIPc-Seq and DRIP-Seq

29. Quantitative, Convenient, and Efficient Genome-Wide R-Loop Profiling by ssDRIP-Seq in Multiple Organisms

            Wei Xu, Kuan Li, Qin Li, Shuai Li, Jincong Zhou, and Qianwen Sun