RNA Folding

Predicting RNA Structure: Advances and Limitations.- Cis-Acting 5' Hammerhead Optimization for In Vitro Transcription of Highly Structured RNAs.- RNA Structural Analysis by Enzymatic Digestion.- A Mutate-and-Map Protocol for Inferring Base Pairs in Structured RNA.- Mapping RNA Structure In Vitro Using Nucleobase-Specific Probes.- Massively Parallel RNA Chemical Mapping with a Reduced Bias MAP-Seq Protocol.- Probing RNA Folding by Hydroxyl Radical Footprinting.- Monitoring Global Structural Changes and Specific Metal Binding Sites in RNA by In-Line Probing and Tb(III) Cleavage.- Chemical Probing of RNA in Living Cells.- A Chemogenetic Approach to Study the Structural Basis of Protein-Facilitated RNA Folding.- Applying UV Crosslinking to Study RNA-Protein Interactions in Multicomponent Ribonucleoprotein Complexes.- The Kinetics of Ribozyme Cleavage: A Tool to Analyze RNA Folding as a Function of Catalysis.- RNA Catalytic Activity as a Probe of Chaperone-Mediated RNA Folding.- Evaluation of RNA Chaperone Activity In Vivo and In Vitro Using Misfolded Group I Ribozymes.- RNA Conformational Changes Analyzed by Comparative Gel Electrophoresis.- Detecting RNA Tertiary Folding by Sedimentation Velocity Analytical Ultracentrifugation.- RNA Folding Dynamics Using Laser Assisted Single-Molecule Refolding.- RNA Refolding Studied by Light-Coupled NMR Spectroscopy.- Exploring RNA Oligomerization and Ligand Binding by Fluorescence Correlation Spectroscopy and Small Angle X-Ray Scattering.