High Resolution NMR -  Edwin D. Becker

High Resolution NMR (eBook)

Theory and Chemical Applications
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1999 | 3. Auflage
424 Seiten
Elsevier Science (Verlag)
978-0-08-050806-1 (ISBN)
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High Resolution NMR provides a broad treatment of the principles and theory of nuclear magnetic resonance (NMR) as it is used in the chemical sciences. It is written at an intermediate level, with mathematics used to augment, rather than replace, clear verbal descriptions of the phenomena. The book is intended to allow a graduate student, advanced undergraduate, or researcher to understand NMR at a fundamental level, and to see illustrations of the applications of NMR to the determination of the structure of small organic molecules and macromolecules, including proteins. Emphasis is on the study of NMR in liquids, but the treatment also includes high resolution NMR in the solid state and the principles of NMR imaging and localized spectroscopy.
Careful attention is given to developing and interrelating four approaches - steady state energy levels, the rotating vector picture, the density matrix, and the product operator formalism. The presentation is based on the assumption that the reader has an acquaintance with the general principles of quantum mechanics, but no extensive background in quantum theory or proficiency in mathematics is required. Likewise, no previous background in NMR is assumed, since the book begins with a description of the basic physics, together with a brief account of the historical development of the field.
This third edition of High Resolution NMR preserves the conversational approach of the previous editions that has been well accepted as a teaching tool. However, more than half the material is new, and the remainder has been revised extensively. Problems are included to reinforce concepts in the book.

Key Features
* Uses mathematics to augment, not replace, verbal explanations
* Written in a clear and conversational style
* Follows the successful format and approach of two previous editions
* Revised and updated extensively--about 70 percent of the text is new
* Includes problems and references to additional reading at the end of each chapter
High Resolution NMR provides a broad treatment of the principles and theory of nuclear magnetic resonance (NMR) as it is used in the chemical sciences. It is written at an "e;intermediate"e; level, with mathematics used to augment, rather than replace, clear verbal descriptions of the phenomena. The book is intended to allow a graduate student, advanced undergraduate, or researcher to understand NMR at a fundamental level, and to see illustrations of the applications of NMR to the determination of the structure of small organic molecules and macromolecules, including proteins. Emphasis is on the study of NMR in liquids, but the treatment also includes high resolution NMR in the solid state and the principles of NMR imaging and localized spectroscopy. Careful attention is given to developing and interrelating four approaches - steady state energy levels, the rotating vector picture, the density matrix, and the product operator formalism. The presentation is based on the assumption that the reader has an acquaintance with the general principles of quantum mechanics, but no extensive background in quantum theory or proficiency in mathematics is required. Likewise, no previous background in NMR is assumed, since the book begins with a description of the basic physics, together with a brief account of the historical development of the field. This third edition of High Resolution NMR preserves the "e;conversational"e; approach of the previous editions that has been well accepted as a teaching tool. However, more than half the material is new, and the remainder has been revised extensively. Problems are included to reinforce concepts in the book. - Uses mathematics to augment, not replace, verbal explanations- Written in a clear and conversational style- Follows the successful format and approach of two previous editions- Revised and updated extensively--about 70 percent of the text is new- Includes problems and references to additional reading at the end of each chapter

Front Cover 1
High Resolution NMR: Theory and Chemical Applications 4
Copyright Page 5
Contents 6
Preface to the Third Edition 16
Chapter 1. Introduction 18
1.1 Origins and Early History of NMR 19
1.2 High Resolution NMR: An Overview 22
1.3 Additional Reading and Resources 29
Chapter 2. The Theory of NMR 30
2.1 Nuclear Spin and Magnetic Moment 30
2.2 Theoretical Descriptions of NMR 31
2.3 Steady–State Quantum Mechanical Description 33
2.4 Effect of the Boltzmann Distribution 36
2.5 Spin-Lattice Relaxation 37
2.6 Precession of Nuclear Magnetic Moments 41
2.7 Classical Mechanical Description of NMR 44
2.8 Magnetization in the Rotating Frame 49
2.9 Methods of Obtaining NMR Spectra 50
2.10 Dynamic Processes 56
2.11 Terminology, Symbols, Units, and Conventions 60
2.12 Additional Reading and Resources 63
2.13 Problems 63
Chapter 3. Instrumentation and Techniques 66
3.1 Advantages of Pulse Fourier Transform NMR 66
3.2 Basic NMR Apparatus 68
3.3 Requirements for High Resolution NMR 69
3.4 Detection of NMR Signals 73
3.5 Phase Cycling 74
3.6 Fourier Transformation of the FID 77
3.7 Data Acquisition 78
3.8 Data Processing 85
3.9 Digital Filtering 89
3.10 Alternatives to Fourier Transformation 91
3.11 Sensitivity and Size of Sample 92
3.12 Useful Solvents 96
3.13 Additional Reading and Resources 97
3.14 Problems 98
Chapter 4. Chemical Shifts 100
4.1 The Origin of Chemical Shifts 100
4.2 Theory of Chemical Shifts 101
4.3 Measurement of Chemical Shifts 104
4.4 Empirical Correlations of Chemical Shifts 111
4.5 Some Aspects of Proton Chemical Shifts 111
4.6 Nuclei Other Than Hydrogen 124
4.7 Compilations of Spectral Data and Empirical Estimates of Chemical Shifts 125
4.8 Isotope Effects 126
4.9 Effects of Molecular Asymmetry 126
4.10 Paramagnetic Species 129
4.11 Additional Reading and Resources 131
4.12 Problems 132
Chapter 5. Coupling between Pairs of Spins 136
5.1 Origin of Spin Coupling Interactions 136
5.2 General Aspects of Spin–Spin Coupling 139
5.3 Theory of Spin–Spin Coupling 145
5.4 Correlation of Coupling Constants with Other Physical Properties 146
5.5 Effect of Exchange 149
5.6 Spin Decoupling and Double Resonance 150
5.7 Additional Reading and Resources 151
5.8 Problems 152
Chapter 6. Structure and Analysis of Complex Spectra 156
6.1 Symmetry and Equivalence 157
6.2 Notation 159
6.3 Energy Levels and Transitions in an AX System 160
6.4 Quantum Mechanical Treatment 162
6.5 The Two-Spin System without Coupling 165
6.6 Factoring the Secular Equation 167
6.7 Two Coupled Spins 168
6.8 The AB Spectrum 171
6.9 AX, AB, and A2 Spectra 174
6.10 "First-Order" Spectra 175
6.11 Symmetry of Spin Wave Functions 178
6.12 General Procedures for Simulating Spectra 180
6.13 Three-Spin Systems 181
6.14 Relative Signs of Coupling Constants 185
6.15 Some Consequences of Strong Coupling and Chemical Equivalence 188
6.16 "Satellites" from Carbon-13 and Other Nuclides 192
6.17 The AA'BB' and AA'XX' Systems 193
6.18 Additional Reading and Resources 194
6.19 Problems 195
Chapter 7. Spectra of Solids 200
7.1 spin Interactions in Solids 201
7.2 Dipolar Interactions 201
7.3 "Scalar Coupling" 204
7.4 The Heteronuclear Two-Spin System 204
7.5 Dipolar Decoupling 206
7.6 Cross Polarization 207
7.7 The Homonuclear Two-Spin System 208
7.8 Line Narrowing by Multiple Pulse Methods 209
7.9 Anisotropy of the Chemical Shielding 211
7.10 Magic Angle Spinning 212
7.11 Quadrupole Interactions and Line-Narrowing Methods 215
7.12 Other Aspects of Line Shapes 217
7.13 Orientation Effects in Liquids: Liquid Crystals 218
7.14 Additional Reading and Resources 220
7.15 Problems 220
Chapter 8. Relaxation 222
8.1 Molecular Motions and Processes for Relaxation in Liquids 223
8.2 Nuclear Magnetic Dipole Interactions 226
8.3 Nuclear Overhauser Effect 229
8.4 Relaxation via Chemical Shielding Anisotropy 232
8.5 Electric Quadrupole Relaxation 233
8.6 Scalar Relaxation 234
8.7 Spin–Rotation Relaxation 236
8.8 Relaxation by Paramagnetic Substances 237
8.9 Other Factors Affecting Relaxation 238
8.10 Additional Reading and Resources 241
8.11 Problems 241
Chapter 9. Pulse Sequences 244
9.1 The Spin Echo 245
9.2 The Carr–Purcell Pulse Sequence 250
9.3 Correcting for Pulse Imperfections 251
9.4 Spin Locking 253
9.5 Selective Excitation 254
9.6 Decoupling 259
9.7 Polarization Transfer Methods 260
9.8 Additional Reading and Resources 265
9.9 Problems 265
Chapter 10. Two-Dimensional NMR 268
10.1 General Aspects of 2D spectra 268
10.2 A Survey of Basic 2D Experiments 276
10.3 Data Acquisition and Processing 285
10.4 Sensitivity Considerations 291
10.5 Additional Reading and Resources 294
10.6 Problems 294
Chapter 11. Density Matrix and Product Operator Formalisms 296
11.1 The Density Matrix 297
11.2 Transformations of the Density Matrix 304
11.3 The One-Spin System 306
11.4 The Two-Spin System 310
11.5 INEPT and Related Pulse Sequences 315
11.6 Product Operators 319
11.7 Coherence Transfer Pathways 328
11.8 Additional Reading and Resources 333
11.9 Problems 333
Chapter 12. Selected 1D, 2D, and 3D Experiments: A Further Look 334
12.1 Spectral Editing 334
12.2 Double Quantum Filtering Experiments 339
12.3 COSY 344
12.4 Heteronuclear Correlation by Indirect Detection 351
12.5 Three- and Four-Dimensional NMR 356
12.6 Additional Reading and Resources 362
12.7 Problems 363
Chapter 13. Elucidation of Molecular Structure and Macromolecular Conformation 364
13.1 Organic Structure Elucidation 365
13.2 Application of Some Useful 2D Methods 369
13.3 Structure and Configuration of Polymers 372
13.4 Three-Dimensional Structure of Biopolymers 375
13.5 Additional Reading and Resources 384
Chapter 14. NMR Imaging and Spatially Localized Spectroscopy 386
14.1 Use of Magnetic Field Gradients to Produce Images 386
14.2 Use of 2D NMR Methods in Imaging 388
14.3 k Space Echo Planar Imaging
14.4 Factors Affecting Image Contrast 392
14.5 Chemical Shift Imaging and in Vivo Spectroscopy 395
14.6 NMR Imaging in Solids 396
14.7 Additional Reading and Resources 397
Appendix A. Properties of Common Nuclear Spins 398
Appendix B. ABX and AA'XX' Spectra 402
B.l The ABX System 402
B.2 The AA'XX' System 406
Appendix C. Review of Relevant Mathematics 410
C.1 Complex Numbers 410
C.2 Trigonometric Identities 411
C.3 Vectors 411
C.4 Matrices 412
Appendix D. Spin Matrices 414
D.1 One Spin 414
D.2 Two-Spin System 414
Appendix E. Selected Answers to Problems 418
References 428
Index 434

Chapter 2

The Theory of NMR


In this chapter we discuss the basic physics underlying NMR. A few fundamental concepts in both classical and quantum mechanics are assumed. Standard texts in these areas should be consulted if additional background is needed.

2.1 NUCLEAR SPIN AND MAGNETIC MOMENT


We know from basic quantum mechanics that angular momentum is always quantized in half-integral or integral multiples of, ħ, where ħ is Planck’s constant divided by 2π. For the electron spin, the multiple (or spin quantum number) is ½, but the value for nuclear spin differs from one nuclide to another as a result of interactions among the protons and neutrons in the nucleus. If we use the symbol I to denote this nuclear spin quantum number (or, more commonly, just nuclear spin), we can write for the maximum observable component of angular momentum

=Iℏ=Ih/2π

  (2.1)

We can classify nuclei, then, according to their nuclear spins. There are a number of nuclei that have I = 0 and hence possess no angular momentum. This class of nuclei includes all those that have both an even atomic number and an even mass number; for example, the isotopes 12C, 16O, and 32S. These nuclei, as we shall see, cannot experience magnetic resonance under any circumstances. The spins of a few of the more common nuclei are:

=12:1H,3H,13C,15N,19F,31Ρ

=1:2HD,14N

>1:10B,11B,17O,23Na,27Al,35Cl,59Co

The nuclei that have I > ½ have a nonspherical nuclear charge distribution and hence an electric quadrupole moment Q. We shall consider the effect of the quadrupole moment later. Our present concern is with all nuclei that have I ≠ 0, because each of these possesses a magnetic dipole moment, or a magnetic moment μ. We can think of this moment qualitatively as arising from the spinning motion of a charged particle. This is an oversimplified picture, but it nevertheless gives qualitatively the correct results that (1) nuclei that have a spin have a magnetic moment and (2) the magnetic moment is collinear with the angular momentum vector. We can express these facts by writing.

=γp

  (2.2)

(We use the customary boldface type to denote vector quantities.) The constant of proportionality γ is called the magnetogyric ratio and is different for different nuclei, because it reflects nuclear properties not accounted for by the simple picture of a spinning charged particle. (Sometimes γ is termed the gyromagnetic ratio.) While p is a simple multiple of ħ, μ and hence γ are not and must be determined experimentally for each nuclide (usually by an NMR method). Properties of most common nuclides that result from nuclear spin are given in Appendix A.

2.2 THEORETICAL DESCRIPTIONS OF NMR


The theory of NMR can be approached in several ways, each of which has both advantages and disadvantages. We will emphasize several apparently different theoretical strategies in explaining various aspects of NMR. Actually, these approaches are entirely consistent but utilize differing degrees of approximation to give simple pictures and intuitively appealing explanations that are correct within their limits of validity.

Transitions between Stationary State Energy Levels


We have seen that NMR is a quantum phenomenon, and to some extent we can develop a theoretical framework by using the same sort of treatment used for other branches of spectroscopy: We first find the eigenvalues (energy levels) of the quantum mechanical Hamiltonian operator that describes the nuclear spin system and then use time-dependent perturbation theory to predict the probability of transitions among these energy levels. This procedure provides the frequencies and relative intensities that characterize an NMR spectrum. As we see in the following section and in more detail in Chapter 6, this approach works very well in explaining many basic NMR phenomena, and it accounts quantitatively for many spectra illustrated in Chapter 1. However, because this approach is based on the time-independent Schrödinger equation, it cannot account for the time-dependent phenomena that occur as nuclear spins respond to perturbations such as application of short radio frequency pulses.

Classical Mechanical Treatment


By using the time-dependent Schrödinger equation, we can follow the behavior of a nuclear spin in the presence of an applied magnetic field, and we show in Section 2.6 that the results are consistent with an appealing vector picture. Moreover, we shall show that the summation of nuclear magnetic moments over the whole ensemble of molecules that constitutes a real sample leads to a macroscopic magnetization that can be treated according to simple laws of classical mechanics. Many NMR phenomena can be quite well understood in terms of such simple classical treatments of magnetization vectors; indeed, in the first full paper on NMR, Bloch used classical mechanics to describe many important features of the technique. We shall employ this vector picture extensively, particularly in Chapters 2, 9, and 10.

Yet, it is clear that the classical mechanics approach is inadequate simply because it ignores quantum effects. To some extent, these features can be arbitrarily grafted onto a classical picture, but as we shall see, many of the newer and now most important NMR studies cannot be understood this way.

The Density Matrix


Fortunately there is a simple mathematical formalism that gives us the best of the quantum and classical approaches. By recasting the time-dependent Schrödinger equation into a form using a so-called density operator, physicists have long been able to follow the development of a quantum system with time. This formalism preserves all quantum features but permits a natural explanation of time-dependent phenomena, so that effects of phase and coherence can be understood. For NMR it turns out to be rather easy to set up the necessary theory in terms of a matrix—the density matrix—and to use simple matrix manipulations to follow the time course of the nuclear spin system.

Why, then, do we not ignore the preceding approaches and go directly to the density matrix? The answer is that the density matrix method, while conceptually simple, becomes very tedious and gives very little physical insight into processes that occur. We will come back to the density matrix in Chapter 11, but only after we have developed a better physical feeling for what happens in NMR experiments.

Product Operators


In Chapter 11 we shall also introduce the product operator formalism, in which the basic ideas of the density matrix are expressed in a simpler algebraic form that resembles the spin operators characteristic of the steady-state quantum mechanical approach. Although there are some limitations in this method, it is the general approach used to describe modern multidimensional NMR experiments.

2.3 STEADY-STATE QUANTUM MECHANICAL DESCRIPTION


As with other branches of spectroscopy, an explanation of many aspects of NMR requires the use of quantum mechanics. Fortunately, the particular equations needed are simple and can be solved exactly.

The Hamiltonian Operator


We are interested in what happens when a magnetic moment μ, interacts with an applied magnetic field B0—an interaction commonly called the Zeeman interaction. Classically, the energy of this system varies, as illustrated in Fig. 2.1a, with the cosine of the angle between μ. and B0, with the lowest energy when they are aligned. In quantum theory, the Zeeman appears in the Hamiltonian operator H,

=−μ·Β0

  (2.3)

Figure 2.1 (a) Relative orientations of magnetic moment μ and magnetic field B0. (b) Quantized projection of μ on...

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