Mass Spectrometry-Based Proteomics

1. Increasing the Overall Proteome Coverage by Combining Protein Digestion by Tryp-N and Trypsin.- Cell Surface Biotinylation Using Furan Crosslinking Chemistry.- Studying Cellular Dynamics Using Proximity-Dependent Biotinylation: Somatic Cell Reprogramming.- Virotrap: Trapping Protein Complexes in Virus-Like Particles.- Thermal Proteome Profiling for Drug Target Identification and Probing of Protein States.- Improved Coverage of the N-Terminome by Combining ChaFRADIC with Alternative Proteases.- Sensitive and High-Throughput Exploration of Protein N Termini by TMT-TAILS N-Terminomics.- The Global Acetylation Profiling Pipeline for Quick Assessment of Protein N-Acetyltransferase Specificity In Cellulo.- Systems-Wide Site-Specific Analysis of Glycoproteins.- Targeted Profiling of Protein Phosphorylation in Plants.- Automated Sample Preparation for Mass Spectrometry-Based Clinical Proteomics.- Proteomics-Based Analysis and Diagnosis of Formalin-Fixed Paraffin-Embedded Amyloidosis Samples.- A Robust and Clinically-Applicable Sample Preparation Protocol for Urinary Extracellular Vesicle Isolation Suitable for Mass Spectrometry-Based Proteomics.- Density-Based Fractionation of Cell Conditioned Medium to Prepare Proteomics Grade Extracellular Vesicles.- Mass Spectrometry-Based Analysis of Histone Post-Translational Modifications from Laser Microdissected Samples.- Phosphoproteomics after Guanidinium Thiocyanate Extraction of Tissue Biopsies.- Probing Antibody Structures by Hydrogen/Deuterium Exchange Mass Spectrometry.