Plant Proteomics

What is New in (Plant) Proteomics Methods and Protocols: the 2015-2019 Quinquennium.- Multiple Biomolecule Isolation Protocol Compatible with Mass Spectrometry and Other High Throughput Analyses in Microalgae.- Protein Interaction Networks: Functional and Statistical Approaches.- Specific Protein Database Creation From Transcriptomics Data In Non-Model Species: Holm oak (Quercus ilex L.).- Subcellular Proteomics in Conifers: Purification of Nuclei and Chloroplast Proteomes.- Apoplastic fluid preparation from Arabidopsis thaliana leaves upon interaction with a Non-Adapted Powdery Mildew Pathogen.- Shotgun Proteomics of Plant Plasma Membrane and Microdomain Proteins Using Nano-LC-MS/MS.- A Protocol for the Plasma Membrane Proteome Analysis of Rice Leaves.- Isolation, Purity Assessment, and Proteomic Analysis of Endoplasmic Reticulum.- Dimethyl Labeling-based Quantitative Proteomics of Recalcitrant Cocoa Pod Tissue.- Quantitative Profiling of Protein Abundance and Phosphorylation State in Plant Tissues using Tandem Mass Tags.- Optimizing Shotgun Proteomics Analysis for a Confident Protein Identification and Quantitation in Orphan Plant Species; the case of Holm oak (Quercus ilex).- Combining Targeted and Untargeted Data Acquisition To Enhance Quantitative Plant Proteomics Experiments.- Phosphoproteomic Pipeline in Peels of Tropical Fruits.- Label-Free Quantitative Phosphoproteomics for Algae.- Targeted Quantification of Phosphopeptides by Parallel Reaction Monitoring (PRM).- Enrichment of N-linked Glycopeptides and their Identification by Complementary Fragmentation Techniques.- High Resolution Lysine Acetylome Profiling By Offline Fractionation and Immunoprecipitation.- A Versatile Workflow for the Identification of Protein–Protein Interactions using GFP-Trap Beads And Mass Spectrometry-Based Label-Free Quantification.- In vivo cross-linking to Analyse Transient Protein-Protein Interactions.- Proteomic Analysis of 14-3-3 Targets in Tomato Fruit Tissues.- The use of Proteomics in Search 0f Allele Specific Proteins in (allo)polyploid Crops.- Methods for Optimization of Protein Extraction and Proteogenomic Mapping in Sweetpotato.- In silico Analysis of Class III peroxidases: Hypothetical Structure, Ligand Binding-Sites, Post-Translational Modifications and Interaction with Substrates.- MALDI Mass Spectrometry Imaging of Peptides in Medicago truncatula Root Nodules.- Cystatin Activity-Based Protease Profiling to Select Protease Inhibitors Useful in Plant Protection.- Pipeline for the Metabolic Pathway Reconstruction in Plant Orphan Species.- Detection of Plant Low-Abundance Proteins By Means Of Combinatorial Peptide Ligand Library Methods.- iTRAQ-based Proteomic Analysis of Rice Grains.