Stem Cell Transcriptional Networks

Epitope Tagging ChIP-seq of DNA Binding Proteins using CETCh-seq.- User-friendly and Interactive Analysis of ChIP-seq data using EaSeq.- Evaluation of 3D Chromatin Interactions using Hi-C.- MSTD for Detecting Topological Domains from 3D Genomic Maps.- Creating 2D Occupancy Plots using plot2DO.- Detection of Epigenetic Field Defects Using a Weighted Epigenetic Distance-based Method.- Profiling Cell Type Abundance and Expression in Bulk Tissues with CIBERSORTx.- Visualization of Single Cell RNA-Seq Data using t-SNE in R.- Use of SuperCT for Enhanced Characterization of Single-cell Transcriptomic Profiles.- Interactive Alternative Splicing Analysis of Human Stem Cells using psichomics.- Gene Ontology Semantic Similarity Analysis using GOSemSim.- Derivation of Maternogenic Epiblast Stem Cells from Haploid Embryos.- Derivation of LIF-independent Embryonic Stem Cells using Inducible OCT4 Expression.- Simultaneous Derivation of Embryonic and Trophoblast Stem Cells from Mouse Blastocysts.- Reprogramming Fibroblasts to Neural Stem Cells by Overexpression of the Transcription factor Ptf1a.- Reprogramming of Fibroblasts to Neural Stem Cells by a Chemical Cocktail.- Efficient RNA-based Reprogramming of Disease-associated Primary Human Fibroblasts into Induced Pluripotent Stem Cells.- Direct Reprogramming Of Mouse Embryonic Fibroblasts to Induced Trophoblast Stem (iTS) Cells.- Characterization of Arsenic-induced Cancer Stem-like Cells.