Biological Networks and Pathway Analysis

A Practical Guide to Quantitative Interactor Screening with Next-Generation Sequencing (QIS-Seq).- sbv IMPROVER: Modern Approach to Systems Biology.- Mathematical Justification of Expression-Based Pathway Activation Scoring (PAS).- Bioinformatics Meets Biomedicine: OncoFinder, a Quantitative Approach for Interrogating Molecular Pathways Using Gene Expression Data.- Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks.- Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated “Knowledge-Based” Platform.- Extracting the Strongest Signals from Omics Data: Differentially Expressed Pathways and Beyond.- Search for Master Regulators in Walking Cancer Pathways.- Mathematical Modeling of Avidity Distribution and Estimating General Binding Properties of Transcription Factors from Genome-Wide Binding Profiles.- A Weighted SNP Correlation Network Method for Estimating Polygenic Risk Scores.- Analysis of cis-Regulatory Elements in Gene Co-Expression Networks in Cancer.- Applying Association Rule Mining Techniquest to Predict Procaryotic Metabolic Pathways.- ArrayTrack: An FDA and Public Genomic Tool.- Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments.- Comprehensive Analyses of Tissue-Specific Networks with Implications to Psychiatric Diseases.- Semantic Data Integration and Knowledge Management to Represent Biological Network Associations.- Knowledge-Based Compact Disease Models: A Rapid Path from High-Throughput Data to Understanding Causative Mechanisms for a Complex Disease.- Pharmacologic Manipulation of Wnt Signaling and Cancer Stem Cells.- Functional Network Disruptions in Schizophrenia.