Tumor Profiling

Amplicon-based Targeted Next Generation Sequencing of Formalin Fixed Paraffin Embedded Tissue.- Library preparation using FFPE-derived Tumor DNA for High Throughput Hybridization-based Targeted or Exome Sequencing.- Bioinformatics Basics for High Throughput Hybridization-based Targeted DNA Sequencing From FFPE-Derived Tumor Specimens: From Reads to Variants.- Annotation of Variant Data from High Throughput DNA Sequencing from Tumor Specimens: Filtering Strategies to Identify Driver Mutations.- Biological Interpretation of Complex Genomic Data.- Clinical Validation of Targeted Solid Tumor Profiling.- Whole Genome Single Nucleotide Polymorphism Microarray for Copy Number and Loss of Heterozygosity Analysis in Tumors.- Genome-Wide Copy Number Variation Detection using NGS: Data Analysis and Interpretation.- Overview of Fusion Detection Strategies Using Next Generation Sequencing.- Clinical Application of Fusion Gene Detection Using Next-generation Sequencing and the NanoString Technology.- Pipeline for Integrated Microarray Expression Normalization Toolkit (PIMENTo) for Tumor Microarray Profiling Experiment.- Molecular Profiling of RNA Tumors using High Throughput RNA Sequencing: Overview of Library Preparation Methods.- Molecular Profiling of RNA Tumors using High Throughput RNA Sequencing:  From Raw Data to Systems Level Analyses.- Methylation Analysis using Microarrays: Analysis and Interpretation.- High-Throughput Targeted Repeat Element Bisulfite Sequencing (HT-TREBS).- A Pipeline for ctDNA Detection Following Primary Tumor Profiling Using A Cancer-related Gene Sequencing Panel.- Single-cell Analysis of Circulating Tumor Cells.