Plant Pathogenic Fungi and Oomycetes

Quantifying Re-association of a Facultative Endohyphal Bacterium with a Filamentous Fungus.- Characterizing Mycoviruses.- Analysis of Secondary Metabolites from Plant Endophytic Fungi.- Protocols for Investigating the Leaf Mycobiome using High throughput DNA Sequencing.- Characterizing Small RNAs in Filamentous Fungi using the Rice Blast Fungus, Magnaporthe oryzae, as an Example.- Plant Small RNAs Responsive to Fungal Pathogen Infection.- Sequential Phosphopeptide Enrichment for phosphoproteome Analysis of Filamentous Fungi: A Test Case using Magnaporthe oryzae.- Assays for MAP kinase Activation in Magnaporthe oryzae and other Plant Pathogenic Fungi.- Visualizing the Movement of Magnaporthe oryzae Effector Proteins in Rice Cells during Infection.- Illuminating Phytophthora Biology with Fluorescent Protein Tags.- Methods for Transient Gene Expression in Wild Relatives of Potato.- Host-induced Gene Silencing (HIGS) for Elucidating Puccinia Gene Function in Wheat.- From Short Reads to Chromosome-scale Genome Assemblies.- BLASTmap: A Shiny-based Application to Visualise BLAST Results as Interactive Heat Maps and a Tool to Design Gene Specific Baits for Bespoke Target Enrichment Sequencing.- A Computational Protocol to Analyze Meta-transcriptomic Data Capturing Fungal-host Interactions.- Application of the Cre/lox System to Construct Auxotrophic Markers for Quantitative Genetic Analyses in Fusarium graminearum.- Protocol of Phytophthora capsici Transformation using the CRISPR-Cas9 System.- Generating Gene Silenced Mutants in Phytophthora sojae.