Protein Structure Prediction

Protein Structure Modeling with MODELLER.- RaptorX Server: A Resource for Template-based Protein Structure Modeling.- The MULTICOM Protein Tertiary Structure Prediction System.- Modeling of Protein Side-chain Conformations with RASP.- Direct Coupling Analysis for Protein Contact Prediction.- ITScorePro – An efficient Scoring Program for Evaluating the Energy Scores of Protein Structures for Structure Prediction.- Assessing the Quality of Modelled 3D Protein Structures using the ModFOLD Server.- 3D-SURFER 2.0: Web Platform for Real-Time Search and Characterization of Protein Surfaces.- SPOT-Seq-RNA: Predicting Protein-RNA Complex Structure and RNA-binding Function by Fold Recognition and Binding Affinity Prediction.- POODLE: Tools Predicting Intrinsically Disordered Regions of Amino Acid Sequence.- Prediction of Intrinsic Disorder in Proteins using MFDp2.- Modeling Protein-protein Complexes using the HADDOCK Webserver.- Predicting the Structure of Protein-protein Complexes using the SwarmDock Web Server.- DOCK/PIERR : Web Server for Structure Prediction of  Protein--Protein Complexes.- Pairwise and Multimeric Protein-Protein Docking Using the LZerD Program Suite.- Protocols for Efficient Simulations of Long Time Protein Dynamics using Coarse-grained CABS Model.