Research in Computational Molecular Biology

Recomb Retrospectives.- The Second Decade of theInternational Conference on Research in Computational Molecular Biology(RECOMB).- Extended Abstracts.- A MAD-Bayes Algorithm for State-space Inferenceand Clustering with Application to Querying Large Collections of ChIP-Seq DataSets.- Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-PairingCodons in Yeast.- Multitask matrix completion for learning protein interactionsacross diseases.- pathTiMEx: Joint Inference of Mutually Exclusive CancerPathways and their Dependencies in Tumor Progression.- Clonality inference fromsingle tumor samples using low coverage sequence data.- Flexible Modelling ofGenetic Effects on Function-Valued Traits.- MetaFlow: Metagenomic profilingbased on whole-genome coverage analysis with min-cost flows.- LUTE (LocalUnpruned Tuple Expansion): Accurate continuously flexible protein design withgeneral energy functions and rigid-rotamerlike efficiency.- Improving Bloom filterperformance on sequence data using k-mer Bloom filters.-Safe and completecontig assembly via omnitigs.- Long single-molecule reads can resolve thecomplexity of the Influenza virus composed of rare, closely related mutantvariants.-Structural variation detection with read pair information { An improvednull-hypothesis reduces bias.- On Computing Breakpoint Distances for Genomeswith Duplicate Genes.- New Genome Similarity Measures based on Conserved GeneAdjacencies.- Fast Phylogenetic Biodiversity Computations Under a Non-Uniform RandomDistribution.- Short Abstracts.- SLICER: Inferring Branched, Nonlinear CellularTrajectories from Single Cell RNA-seq Data.- Multi-track modeling forgenome-scale reconstruction of 3D chromatin structure from Hi-C data.- Revealingthe Genetic Basis of Immune Traits in the Absence of ExperimentalImmunophenotyping.- Shall we dense? Comparing design strategies for time seriesexpression experiments.- Enabling Privacy-Preserving GWAS in HeterogeneousHuman Populations.- Efficient Privacy-Preserving Read Mapping Using LocalitySensitive Hashing and Secure Kmer Voting.- Finding Mutated Subnetworks Associatedwith Survival Time in Cancer.- Multi-State Perfect Phylogeny MixtureDeconvolution and Applications to Cancer Sequencing.- Tree inference forsingle-cell data.- mLDM: a new hierarchical Bayesian statistical model forsparse microbial association discovery.- Low-density locality-sensitive hashingboosts metagenomic binning.- metaSPAdes: a new versatile de novo metagenomicsassembler.- Distributed Gradient Descent in Bacterial Food Search.-AptaTRACE:Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends inHT-SELEX Experiments.- Fast Bayesian Inference of Copy Number Variants usingHidden Markov Models with Wavelet Compression.- Allele-Specific Quantificationof Structural Variations in Cancer Genomes.- Assembly of Long Error-Prone ReadsUsing de Bruijn Graphs.- Locating a Tree in a Reticulation-Visible Network inCubic Time.- Joint alignment of multiple protein-protein interaction networksvia convex optimization.- Complexes Detection in Biological Networks viaDiversified Dense Subgraphs Mining.