Prediction of Protein Structure and the Principles of Protein Conformation

1. Principles and Patterns of Protein Conformation.- 2. The Structure of the Photochemical Reaction Center of Rhodopseudomonas viridis and Its Implications for Function.- 3. Virus Structure.- 4. Protein Stability and Function: Theoretical Studies.- 5. Stabilization Energies of Protein Conformation.- 6. The Development of the Prediction of Protein Structure.- 7. The Role of Energy Minimization in Simulation Strategies of Biomolecular Systems.- 8. The Role of Electrostatic Interactions in the Structure of Globular Proteins.- 9. Chou-Fasman Prediction of the Secondary Structure of Proteins: The Chou-Fasman-Prevelige Algorithm.- 10. The GOR Method for Predicting Secondary Structures in Proteins.- 11. Prediction of Packing of Secondary Structure.- 12. Prediction of Protein Structural Classes from Amino Acid Compositions.- 13. Use of Class Prediction to Improve Protein Secondary Structure Prediction: Joint Prediction with Methods Based on Sequence Homology.- 14. Redundancies in Protein Sequences.- 15. The Hydrophobicity Profile.- 16. Hydrophobic Moments as Tools for Analyzing Protein Sequences and Structures.- 17. Tertiary Structure Prediction.- 18. Structure Prediction for Membrane Proteins.- 19. Identification of Membrane Proteins and Soluble Protein Secondary Structural Elements, Domain Structure, and Packing Arrangements by Fourier-Transform Amphipathic Analysis.- 20. Guide for Studies on Structure and Function Employing Synthetic Polypeptides.- Appendixes (included in Chapter 6).- Appendix 1: List of Reviews on Protein Folding and Prediction of Secondary and Tertiary Structure.- Appendix 2: Programs Available through This Publication for Protein Secondary Structure Prediction.- Appendix 3: Commercially Available Programs.- Appendix 4: Relevant Programs Described in the Literature.- Appendix 5: National Resource Data Bases.