Computational and Evolutionary Analysis of HIV Molecular Sequences

Preface. 1. Sampling and Processing HIV Molecular Sequences: a Computational Evolutionary Biologist's Perspective; A.G. Rodrigo, et al. 2. Accessing HIV Molecular Information; B.T. Foley. 3. HIV-1 Subtyping; C.L. Kuiken, T. Leitner. 4. HIV Sequence Signatures and Similarities; B. Korber. 5. Graphical Methods for Exploring Sequence Relationships; G.F. Weiller. 6. Quantifying Heterogeneity in the HIV Genome; H.P. Pinheiro, F. Seillier-Moisewitsch. 7. Phylogenetics of HIV; D. Posada, et al. 8. Goals and Strategies for Analysis of Recombination Among Molecular Sequences; J.C. Stephens. 9. Molecular Population Genetics: Coalescent Methods Based on Summary Statistics; D.A. Vasco, et al. 10. Population Genetics of HIV: Parameter Estimation Using Genealogy-Based Methods; P. Beerli, et al. 11. Detecting Selection in Protein Coding Genes Using the Rate of Nonsynonymous and Synonymous Divergence; R. Neilsen. 12. Drugs Targeted at HIV - Successes and Resistance; C. Sansom, A. Wlodawer. Index.