Immunoinformatics (eBook)

Bioinformatic Strategies for Better Understanding of Immune Function
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2004 | 1. Auflage
272 Seiten
Wiley (Verlag)
978-0-470-09075-6 (ISBN)

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The astounding diversity of the immune system and the complexity of its regulatory pathways makes immunology a combinatorial science. Computational analysis has therefore become an essential element of immunology research and this has led to the creation of the emerging field of immunoinformatics. This book is the first to feature thorough coverage of this new field.

Immunoinformatics facilitates the understanding of immune function by modelling the interactions among immunological components. Biological research provides ever deeper insights into the complexity of living organisms while computer science provides an effective means to store and analyse large volumes of complex data. Combining the two fields increases the efficiency of biological research and offers the potential for major advances in the study of biological systems.

This book encompasses key developments in immunoinformatics, including immunological databases, sequence analysis, structure modelling, mathematical modelling of the immune system, simulation of laboratory experiments, statistical support for immunological experimentation and immunogenomics.

The difficulties in effective application of bioinformatic tools in immunology arise at both ends of the spectrum: most immunologists have only a limited comprehension of sophisticated data analysis and applicability and limitations, while the average computer scientist lacks knowledge of the depth and complexity of biological data. The purpose of this book, therefore, is to present contributions from a multidisciplinary team of biologists and computer scientists to explore the issues related to better understanding of immune function and, in particular, to help apply new computer science methods to immunological research.

Related Novartis Foundation symposia:

247 In Silico Simulation of Biological Processes
Chair: Denis Noble

252 Generation and effector functions of regulatory lymphocytes
Chair: Jean-François Bach



The Novartis Foundation is an international scientific and educational charity which promotes the study and general knowledge of science and in particular encourages international co-operation in scientific research.
The astounding diversity of the immune system and the complexity of its regulatory pathways makes immunology a combinatorial science. Computational analysis has therefore become an essential element of immunology research and this has led to the creation of the emerging field of immunoinformatics. This book is the first to feature thorough coverage of this new field. Immunoinformatics facilitates the understanding of immune function by modelling the interactions among immunological components. Biological research provides ever deeper insights into the complexity of living organisms while computer science provides an effective means to store and analyse large volumes of complex data. Combining the two fields increases the efficiency of biological research and offers the potential for major advances in the study of biological systems. This book encompasses key developments in immunoinformatics, including immunological databases, sequence analysis, structure modelling, mathematical modelling of the immune system, simulation of laboratory experiments, statistical support for immunological experimentation and immunogenomics. The difficulties in effective application of bioinformatic tools in immunology arise at both ends of the spectrum: most immunologists have only a limited comprehension of sophisticated data analysis and applicability and limitations, while the average computer scientist lacks knowledge of the depth and complexity of biological data. The purpose of this book, therefore, is to present contributions from a multidisciplinary team of biologists and computer scientists to explore the issues related to better understanding of immune function and, in particular, to help apply new computer science methods to immunological research. Related Novartis Foundation symposia: 247 In Silico Simulation of Biological ProcessesChair: Denis Noble 252 Generation and effector functions of regulatory lymphocytesChair: Jean-Fran ois Bach

The Novartis Foundation is an international scientific and educational charity which promotes the study and general knowledge of science and in particular encourages international co-operation in scientific research.

IMMUNOINFORMATICS: BIOINFORMATIC STRATEGIES FOR BETTER UNDERSTANDING OF IMMUNE FUNCTION 3
Contents 7
Participants 9
Chair’s introduction 11
Immunoinformatics — the new kid in town 13
Discussion 23
The future for computational modelling and prediction systems in clinical immunology 33
Discussion 43
Immunoinformatics in personalized medicine 53
Discussion 60
From immunome to vaccine: epitope mapping and vaccine design tools 67
Discussion 82
Insights from MHC-bound peptides 87
Discussion 101
General discussion I 108
Computational vaccinology: quantitative approaches 112
Discussion 130
IMGT, the international ImMunoGeneTics information system(®), http://imgt.cines.fr 136
Discussion 146
Generating data for databases — the peptide repertoire of HLA molecules 153
Discussion 165
HLA nomenclature and the IMGT/HLA Sequence Database 175
Discussion 183
From immunogenetics to immunomics: functional prospecting of genes and transcripts 187
Discussion 199
Mathematical models of HIV and the immune system 203
Discussion 217
General discussion II 226
Immunogenomics: towards a digital immune system 233
Discussion 240
Viral bioinformatics: computational views of host and pathogen 244
Discussion 257
Final general discussion 260
Closing remarks 263
Index of contributors 264
Subject index 266

Erscheint lt. Verlag 5.3.2004
Reihe/Serie Novartis Foundation Symposium
Sprache englisch
Themenwelt Medizin / Pharmazie Medizinische Fachgebiete
Studium Querschnittsbereiche Infektiologie / Immunologie
Naturwissenschaften Biologie
Schlagworte Biochemie • Bioinformatics & Computational Biology • Bioinformatik • Bioinformatik u. Computersimulationen in der Biowissenschaften • Biowissenschaften • Immunologie • Life Sciences • Molekularbiologie
ISBN-10 0-470-09075-8 / 0470090758
ISBN-13 978-0-470-09075-6 / 9780470090756
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