In Silico Genomics & Proteomics -

In Silico Genomics & Proteomics

Functional Annotation of Genomes & Proteins

Nicola Mulder, Rolf Apweiler (Herausgeber)

Buch | Hardcover
226 Seiten
2006
Nova Science Publishers Inc (Verlag)
978-1-59454-995-3 (ISBN)
226,75 inkl. MwSt
The advancement of DNA sequencing technologies has resulted in a movement towards a whole genome focus. This book highlights the advances in DNA sequencing, and summarises the process of genome and protein annotation. It also describes the tools required to achieve this, and provides examples within the context of specific genomes.
The advancement of DNA sequencing technologies has resulted in a movement away from the single gene, and towards a whole genome focus. Previously DNA sequencing was expensive, slow and tedious, but new technologies have been developed that facilitate the relatively cheap and rapid generation of raw sequence from whole bacterial genomes. The sequencing of the human genome was also accelerated in the final phases as a result of new sequencing methods. However, generating the raw sequence is just the start, and tools are required to convert it into useful biological knowledge. This book highlights the new advances in DNA sequencing, and summarises the process of genome and protein annotation. The book also describes the tools required to achieve this, and provide examples within the context of specific genomes.

Genomics and the genome era; Sequence clustering as a method of protein functional annotation; Function prediction with protein signatures and InterPro; The Gene Ontology Annotation (GOA) database; Curator driven protein sequence analysis and annotation; Automated annotation of proteins; Guilt by association: using protein interactions and expression patterns to predict protein function; Artemis and ACT: DNA sequence viewing, annotation and comparison tools; Ensembls annotation pipeline and its use in eukaryotic genomes; Genome annotation and viewing in VEGA; The PEDANT genome database; Microbial genomes at NCBI; PlasmoDB: the Plasmodium genomics and functional genomics resource; Integr8: Navigating Genome Reviews and the Proteome Analysis Database; Index.

Erscheint lt. Verlag 18.12.2006
Zusatzinfo Illustrations, unspecified
Verlagsort New York
Sprache englisch
Maße 260 x 180 mm
Gewicht 704 g
Themenwelt Informatik Weitere Themen Bioinformatik
Naturwissenschaften Biologie Genetik / Molekularbiologie
ISBN-10 1-59454-995-8 / 1594549958
ISBN-13 978-1-59454-995-3 / 9781594549953
Zustand Neuware
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