Deep Sequencing Data Analysis

Detecting Causal Variants in Mendelian Disorders using Whole Genome Sequencing.- Statistical Considerations on NGS Data for Inferring Copy Number Variations.- Applications of Community Detection Algorithms to Large Biological Datasets.- Processing and Analysis of RNA-seq data from Public Resources.- Improved Analysis of High-throughput Sequencing Data Using Small Universal k-mer Hitting Sets.- An Introduction to Whole-metagenome Shotgun Sequencing Studies.- Microbiome Analysis using 16S Amplicon Sequencing: From Samples to ASVs.- RNA-Seq in Non-model Organisms.- Deep Learning Applied on Next Generation Sequencing Data Analysis.- Interrogating the Accessible Chromatin Landscape of Eukaryote Genomes using ATAC-seq.- Genome-Wide Noninvasive Prenatal Diagnosis of SNPs and Indels.- Genome-wide Noninvasive Prenatal Diagnosis of De Novo Mutations.- Accurate Imputation of Untyped Variants from Deep Sequencing Data.- Multi-region Sequence Analysisto Predict Intratumor Heterogeneity and Clonal Evolution.- Overcoming Interpretability in Deep Learning Cancer Classification.- Single-cell Transcriptome Profiling.- Biological Perspectives of RNA-sequencing Experimental Design.- Analysis of microRNA Regulation in Single Cells.- DNA Data Collection and Analysis in the Forensic Arena.