Bioinformatics for Cancer Immunotherapy
Springer-Verlag New York Inc.
978-1-0716-0329-1 (ISBN)
Cutting-edge and authoritative, Bioinformatics for Cancer Immunotherapy: Methods and Protocols is a valuable research tool for any scientist and researcher interested in learning more about this exciting and developing field.
Bioinformatics for Cancer Immunotherapy.- An Individualized Approach for Somatic Variant Discovery.- Ensemble-Based Somatic Mutation Calling in Cancer Genomes.- SomaticSeq: An Ensemble and Machine Learning Method to Detect Somatic Mutations.- HLA Typing from RNA Sequencing and Applications to Cancer.- Rapid High-Resolution Typing of Class I HLA Genes by Nanopore Sequencing.- HLApers: HLA Typing and Quantification of Expression with Personalized Index.- High-Throughput MHC I Ligand Prediction using MHCflurry.- In Silico Prediction of Tumor Neoantigens with TIminer.- OpenVax: An Open-Source Computational Pipeline for Cancer Neoantigen Prediction.- Improving MHC-I Ligand Identification by Incorporating Targeted Searches of Mass Spectrometry Data.- The SysteMHC Atlas: A Computational Pipeline, A Website, and A Data Repository for Immunopeptidomics Analysis.- Identification of Epitope-Specific T Cells in T Cell Receptor Repertoires.- Modeling and Viewing T Cell Receptors using TCRmodel and TCR3d.- In Silico Cell Type Deconvolution Methods in Cancer Immunotherapy.- Immunedeconv - An R Package for Unified Access to Computational Methods for Estimating Immune Cell Fractions from Bulk RNA Sequencing Data.- EPIC: A Tool to Estimate the Proportions of Different Cell Types from Bulk Gene Expression Data.- Computational Deconvolution of Tumor-Infiltrating Immune Components with Bulk Tumor Gene Expression Data.- Cell Type Enrichment Analysis of Bulk Transcriptomes using xCell.- Cap Analysis of Gene Expression (CAGE), A Quantitative and Genome-Wide Assay of Transcription Start Sites.
Erscheinungsdatum | 16.03.2021 |
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Reihe/Serie | Methods in Molecular Biology ; 2120 |
Zusatzinfo | 48 Illustrations, color; 9 Illustrations, black and white; XII, 304 p. 57 illus., 48 illus. in color. |
Verlagsort | New York, NY |
Sprache | englisch |
Maße | 178 x 254 mm |
Themenwelt | Mathematik / Informatik ► Informatik ► Theorie / Studium |
Informatik ► Weitere Themen ► Bioinformatik | |
Medizin / Pharmazie ► Medizinische Fachgebiete ► Onkologie | |
Studium ► Querschnittsbereiche ► Infektiologie / Immunologie | |
Naturwissenschaften ► Biologie ► Genetik / Molekularbiologie | |
ISBN-10 | 1-0716-0329-9 / 1071603299 |
ISBN-13 | 978-1-0716-0329-1 / 9781071603291 |
Zustand | Neuware |
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