Glycoinformatics

Annotation of Glycomics MS and MS/MS Spectra Using the GlycoWorkbench Software Tool.- GlycoBase and autoGU: Resources for Interpreting HPLC-Glycan Data.- NMR Chemical Shift Prediction of Glycans: Application of the Computer Program CASPER in Structural Analysis.- Handling and Conversion of Carbohydrate Sequence Formats and Monosaccharide Notation.- Bacterial, Plant, and Fungal Carbohydrate Structure Databases: Daily Usage.- Using NMR Data on GLYCOSCIENCES.- Glycomic Analysis Using KEGG GLYCAN.- GlycomeDB.- Eukaryotic Glycosylation: Online Methods for Site-Prediction on Protein Sequences.- Analyzing Glycan Structure Synthesis with the Glycan Pathway Predictor (GPP) Tool.- Functional Network in Post-Translational Modifications: Glyco-Net in Glycoconjugate Data Bank.- JCGGDB: Japan Consortium for Glycobiology and Glycotechnology DataBase.- Glycan Array Data Management at Consortium for Functional Glycomics.- Analyzing Glycan Binding Patterns with the ProfilePSTMM Tool.- Exploring the Specificities of Glycan-Binding Proteins Using Glycan Array Data and the GlycoSearch Software.- Statistical Analysis of Amino Acids in the Vicinity of Carbohydrate Residues Performed by GlyVicinity.- Tools to Assist Determination and Validation of Carbohydrate 3D Structure Data.- Glyco3D : A Portal for Structural Glycosciences.- Solution Conformation of Carbohydrates: A View by Using NMR Assisted by Modeling.- Informing Saccharide Structural NMR Studies with Density Functional Theory Calculations.- Energy Maps for Glycosidic Linkage Conformations.- Conformational Analysis of Oligo- and Polysaccharides Using Molecular Dynamics Simulations.- Molecular Dynamics Simulations of Membrane- and Protein-Bound Glycolipids Using GLYCAM.- Lipopolysaccharide Membrane Building and Simulation.- Molecular Dynamics Simulations of Glycoproteins Using CHARMM.- Calculating Binding Free Energies for Protein-Carbohydrate Complexes.- Scoring Functions for AutoDock.- Structures of Glycans Bound toReceptors from Saturation Transfer Difference (STD) NMR Spectroscopy: Quantitative Analysis by Using CORCEMA-ST.- QM/MM Methods for Studying Enzymatic Reactions of Glycosyltransferases.