Computational Methods in Synthetic Biology

Computational Protein Design Methods for Synthetic Biology.- Computer-Aided Design Of DNA Origami Structures.- Computational Design Of RNA Parts, Devices, and Transcripts With Kinetic Folding Algorithms Implemented On Multiprocessor Clusters.- Regulatory RNA Design Through Evolutionary Computation And Strand Displacement.- Programming Languages for Circuit Design.- Kappa Rule-Based Modelling in Synthetic Biology.- Modular Design Of Synthetic Gene Circuits With Biological Parts and Pools.- Computationally Guided Design Of Robust Gene Circuits.- Chemical Master Equation Closure for Computer-Aided Synthetic Biology.- Feedback loops in biological networks.- Efficient Analysis Methods in Synthetic Biology.- Using Computational Modeling and Experimental Synthetic Perturbations to Probe Biological Circuits.- In Silico Control Of Biomolecular Processes.- Stochastic Modular Analysis For Gene Circuits: Interplay Among Retroactivity, Nonlinearity, and Stochasticity.- Distributed Model Construction with Virtual Parts.- The Synthetic Biology Open Language.- Computational Methods For The Construction, Editing, and Error Correction Of DNA Molecules And Their Libraries.