Network Biology

Analysis of Protein–Protein Interactions Using High-throughput Yeast Two-Hybrid Screens.- Identification of Mammalian Protein Complexes by Lentiviral-Based Affinity Purification and Mass Spectrometry.- Protein Networks Involved in Vesicle Fusion, Transport, and Storage Revealed by Array-Based Proteomics.- Identification and Relative Quantification of Native and Proteolytically Generated Protein C-termini from Complex Proteomes: C-terminome Analysis.- Construction of Protein Interaction Networks Based on the Label Free Quantitative Proteomics.- Studying Binding Specificities of Peptide Recognition Modules by High-Throughput Phage Display Selections.- Array-Based Synthetic Genetic Screens to Map Bacterial Pathways and Functional Networks in Escherichia coli.- Advanced Methods for High-Throughput Microscopy Screening of Genetically Modified Yeast Libraries.- Pooled Lentiviral shRNA Screening for Functional Genomics in Mammalian Cells.- Plant DNA Sequencing for Phylogenetic Analyses: From Plants to Sequences.- Using Coevolution to Predict Protein-Protein Interactions.- Visualizing Gene-Set Enrichment Results Using the Cytoscape Plugin Enrichment Map.- Quality Control Methodology for High-Throughput Protein-Protein Interaction Screening.- Filtering and Interpreting Large-Scale Experimental Protein-Protein Interaction Data.- Classification of Cancer Patients Using Pathway Analysis and Network Clustering.- Statistical Analysis of Dynamic Transcriptional Regulatory Network Structure.- Imputing and Predicting Quantitative Genetic Interactions in Epistatic MAPs.- Displaying Chemical Information on a Biological Network Using Cytoscape.- Modeling of Proteins and TheirAssemblies with the Integrative Modeling Platform.- Predicting Node Characteristics from Molecular Networks.- Mathematical Modeling of Biomolecular Network Dynamics.