Mapping the Future of Biology (eBook)

Evolving Concepts and Theories
eBook Download: PDF
2009 | 2009
XI, 173 Seiten
Springer Netherland (Verlag)
978-1-4020-9636-5 (ISBN)

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Carving Nature at its Joints? In order to map the future of biology we need to understand where we are and how we got there. Present day biology is the realization of the famous metaphor of the organism as a bete ˆ machine elaborated by Descartes in Part V of the Discours,a realization far beyond what anyone in the seventeenth century could have im- ined. Until the middle of the nineteenth century that machine was an articulated collection of macroscopic parts, a system of gears and levers moving gasses, solids, and liquids, and causing some parts of the machine to move in response to the force produced by others. Then, in the nineteenth century, two divergent changes occurred in the level at which the living machine came to be investigated. First, with the rise of chemistry and the particulate view of the composition of matter, the forces on macroscopic machine came to be understood as the ma- festation of molecular events, and functional biology became a study of molecular interactions. That is, the machine ceased to be a clock or a water pump and became an articulated network of chemical reactions. Until the ?rst third of the twentieth century this chemical view of life, as re?ected in the development of classical b- chemistry treated the chemistry of biological molecules in much the same way as for any organic chemical reaction, with reaction rates and side products that were the consequence of statistical properties of the concentrations of reactants.
Carving Nature at its Joints? In order to map the future of biology we need to understand where we are and how we got there. Present day biology is the realization of the famous metaphor of the organism as a bete E machine elaborated by Descartes in Part V of the Discours,a realization far beyond what anyone in the seventeenth century could have im- ined. Until the middle of the nineteenth century that machine was an articulated collection of macroscopic parts, a system of gears and levers moving gasses, solids, and liquids, and causing some parts of the machine to move in response to the force produced by others. Then, in the nineteenth century, two divergent changes occurred in the level at which the living machine came to be investigated. First, with the rise of chemistry and the particulate view of the composition of matter, the forces on macroscopic machine came to be understood as the ma- festation of molecular events, and functional biology became a study of molecular interactions. That is, the machine ceased to be a clock or a water pump and became an articulated network of chemical reactions. Until the ?rst third of the twentieth century this chemical view of life, as re?ected in the development of classical b- chemistry treated the chemistry of biological molecules in much the same way as for any organic chemical reaction, with reaction rates and side products that were the consequence of statistical properties of the concentrations of reactants.

Foreword 6
Carving Nature at its Joints? 6
Contents 9
Contributors 11
Introduction 12
1.1 Molecular Biology Meets Evolutionary Biology: Challenges to Post- Mayrian Biology 12
1.2 Elaborating Key Concepts 18
1.3 Detailed Contents of this Book 22
Articulating Different Modes of Explanation: The Present Boundary in Biological Research 25
2.1 Introduction 25
2.2 Molecular Explanatory Models 26
2.3 Putting These Models Side by Side or Opposing Them is a Dead- End 28
2.4 The Difficulty of Interlinking Different Explanations 32
2.5 A Paradoxical Conclusion 34
Compromising Positions: The Minding of Matter 37
3.1 TheWord 37
3.2 38
Four Themes 38
3.3 Serving Two Masters: Minding Matter 46
3.4 Conclusion 53
Abstractions, Idealizations, and Evolutionary Biology 56
4.1 Introduction 56
4.2 Idealization and Abstraction 56
4.3 Successes and Pitfalls 60
4.4 The Informational Gene 62
The Adequacy of Model Systems for Evo-Devo: Modeling the Formation of Organisms/ Modeling the Formation of Society 65
5.1 Introduction 65
5.2 New Model Systems for Evo-Devo 68
5.3 Model Systems and the Assumptions of Developmental and Evolutionary Biology 74
Niche Construction in Evolution, Ecosystems and Developmental Biology 77
6.1 Introduction 77
6.2 Niche Construction 78
6.3 Earthworms 82
6.4 Other Examples 83
6.5 The Limitations of the Standard Theory 84
6.6 Extended Evolutionary Theory 87
6.7 Modelling Niche Construction 88
6.8 The Implications of Niche Construction for Ecology 89
6.9 A Simple Model of an Ecosystem 90
6.10 Ecosystems and Evolution Without Niche Construction 92
6.11 Ecosystems and Evolution with Niche Construction 93
6.12 EMGAs 95
6.13 Integrating Ecology and Evolution 95
6.14 Niche Construction and Developmental Biology 96
6.15 Gene Networks in Development and Ecosystems 98
Novelty, Plasticity and Niche Construction: The Influence of Phenotypic Variation on Evolution 100
7.1 Where Does Novelty Come From? A Hypothesis 100
7.2 Biased Variation and Evolution 102
7.3 Phenotypic Plasticity and its Significance 104
7.4 The Organism-Environment Developmental Loop 110
The Evolution of Complexity 117
8.1 The Arrow of Complexity Hypothesis 118
8.2 Replaying the Tape of Life 119
8.3 Complexity Growth by Passive Diffusion 121
8.4 The Evolution of Complexity in Artificial Life Models 123
8.5 Objections and Replies 128
8.6 Conclusions 136
Self-Organization, Self-Assembly, and the Origin of Life 137
9.1 Introduction 137
9.2 The Origin of Life in Four Acts 139
9.3 The Gospel of Inevitability 141
Self-Organization and Complexity in Evolutionary Theory, or, in this Life the Bread Always Falls Jammy Side Down 147
10.1 What is Life? 148
10.2 Organization 150
10.3 Is Natural Selection All-Powerful? 152
10.4 Constraints 154
10.5 Order for free 157
10.6 Conclusion 160
References 161
Index 176

Erscheint lt. Verlag 26.2.2009
Reihe/Serie Boston Studies in the Philosophy and History of Science
Boston Studies in the Philosophy and History of Science
Zusatzinfo XI, 173 p.
Verlagsort Dordrecht
Sprache englisch
Themenwelt Geisteswissenschaften Philosophie Erkenntnistheorie / Wissenschaftstheorie
Naturwissenschaften Biologie
Technik
Schlagworte Adaptation • Biology • Complexity • Developmental Biology • Evo-devo • Evolution • evolutionary biology • Models • Niche construction • origin of life • the origin
ISBN-10 1-4020-9636-4 / 1402096364
ISBN-13 978-1-4020-9636-5 / 9781402096365
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