Protein-Protein Interaction Networks

Predicting Protein-Protein Interactions using SPRINT.- Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text Mining Protocol.- Construction of Functional Protein Networks using Domain Profile Associations.- Reconstruction of Protein-Protein Interaction Networks using Homology-Based Search: Application to the Autophagy Pathway of Ageing in Podospora anserina.- Predicting Interacting Protein Pairs by Co-Evolutionary Paralog Matching.- A Web-Based Protocol for Inter-Protein Contact Prediction by Deep Learning.- Visual Analysis of Protein-Protein Interaction Docking Models using COZOID Tool.- Path-LZerD: Predicting Assembly Order of Multimeric Protein Complexes.- Embedding Alternative Conformations of Proteins in Protein-Protein Interaction Networks.- Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID).- Generation and Interpretationof Context-Specific Human Protein-Protein Interaction Networks with HIPPIE.- Explore Protein-Protein Interactions for Cancer Target Discovery using the OncoPPi Portal.- Perform Pathway Enrichment Analysis using ReactomeFIViz.- De Novo Pathway Enrichment with KeyPathwayMiner.- De Novo Pathway-Based Classification of Breast Cancer Subtypes.- Vienna Graph Clustering.- On TD-WGcluster - Theoretical Foundations and Guidelines for the User.- An Introductory Guide to Aligning Networks using SANA, the Simulated Annealing Network Aligner.