Multiple Sequence Alignment -

Multiple Sequence Alignment

Methods and Protocols

Kazutaka Katoh (Herausgeber)

Buch | Hardcover
321 Seiten
2020 | 1st ed. 2021
Springer-Verlag New York Inc.
978-1-0716-1035-0 (ISBN)
181,89 inkl. MwSt
Chapter “Alignment of Biological Sequences with Jalview” is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.

The Clustal Omega Multiple Alignment Package.- Phylogeny-Aware Alignment with PRANK and PAGAN.- Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPI.- Aligning Protein-Coding Nucleotide Sequences with MACSE.- Cooperation of Spalm and Prrn5 for Construction of Gene-Structure-Aware Multiple Sequence Alignment.- Multiple Sequence Alignment Computation using the T-Coffee Regressive Algorithm Implementation.- Multiple Sequence Alignment for Large Heterogeneous Datasets using SATé, PASTA, and UPP.- Sequence Comparison without Alignment: The SpaM Approaches.- Lamassemble: Multiple Alignment and Consensus Sequence of Long Reads.- Automated Removal of Non-Homologous Sequence Stretches with PREQUAL.- Analysis of Protein Intermolecular Interaction with MAFFT-DASH.- Mustguseal and Sister Web-Methods: A Practical Guide to Bioinformatic Analysis of Protein Superfamilies.- Alignment of Biological Sequences with Jalview.- Evolutionary Sequence Analysis and Visualization with Wasabi.- Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation.- NCBI Genome Workbench: Desktop Software for Comparative Genomics, Visualization, and GenBank Data Submission.- Revisiting Evaluation of Multiple Sequence Alignment Methods.

Erscheinungsdatum
Reihe/Serie Methods in Molecular Biology ; 2231
Zusatzinfo 90 Illustrations, color; 22 Illustrations, black and white; XIII, 321 p. 112 illus., 90 illus. in color.
Verlagsort New York, NY
Sprache englisch
Maße 178 x 254 mm
Themenwelt Mathematik / Informatik Informatik Theorie / Studium
Informatik Weitere Themen Bioinformatik
Naturwissenschaften Biologie Genetik / Molekularbiologie
Schlagworte GBench • Prank • Promals • QuickProbs • TCoffee
ISBN-10 1-0716-1035-X / 107161035X
ISBN-13 978-1-0716-1035-0 / 9781071610350
Zustand Neuware
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