RNA Structure Prediction

Rtools: A Web Server for Various Secondary Structural Analyses on Single RNA Sequences.- Linear-Time Algorithms for RNA Structure Prediction.- Genome-Wide RNA Secondary Structure Prediction.- Nucleic Acid Structure Prediction Including Pseudoknots through Direct Enumeration of States: A User's Guide to the LandscapeFold Algorithm.- Metrics for RNA Secondary Structure Comparison.- RNA Secondary Structure Prediction Based on Energy Models.- RNA Secondary Structure Alteration Caused by Single Nucleotide Variants.- Evolutionary Conservation of RNA Secondary Structure.- Network-Based Structural Alignment of RNA Sequences Using TOPAS.- Fast RNA-RNA Interaction Prediction Methods for Interaction Analysis of Transcriptome-Scale Large Datasets.- Web Services for RNA-RNA Interaction Prediction.- ResidualBind: Uncovering Sequence-Structure Preferences of RNA-Binding Proteins with Deep Neural Networks.- RNA Structure Determination by High-Throughput Structural Analysis.- RNA 3D Modeling with FARFAR2, Online.-  Automated 3D Design and Evaluation of RNA Nanostructures with RNAMake.- RNA 3D Structure Comparison Using RNA-Puzzles Toolkit.