High Performance Computing Systems and Applications

Keynote Presentations.- High Performance Computing in North America.- Enabling Chemistry Applications with High Performance Computing.- High Performance Programming for Computational Scientists.- Computational Cognition and the Age of Supercomputing: Using High-Performance Computing and Usenet to Model Memory, Meaning and the Mind.- Web-Centric Supercomputing.- Panel Discussion.- Sharing and Security Policies for HPC and HPN.- Policy.- Toward a Model of Models: Part I.- Toward a Model of Models: Part II.- Prospects for a Distributed Research Network: Case Studies of Means, Mechanisms and Issues.- Distributed Memory Performance.- A Testing Strategy for Nondeterministic Message Passing Programs.- Roots: An Object-Oriented Active Message Library.- Hardware Performance and Communication Models of a Distributed Memory Parallel Computer System: A Case Study.- Computational Chemistry.- Applications of High Performance Computing in Vaccine Design.- Modelling Molecules in Intense Laser Fields - Numerical Methods for an IBM-SP2 Parallel Computer Environment.- Molecular Modeling of the Interaction of Neurotrophins with the P75NTR Common Neurotrophin Receptor.- Large Scale Molecular Dynamics Simulation Using MD-Engine.- Parallel Computational Strategies for Viscous Hydrodynamics with Applications to Microfluidics.- Unusual Architectures.- Graph Algorithms on the Linear Array with a Reconfigurable Optical Bus.- Communication Latency Hiding in Reconfigurable Message-Passing Environments: Quantitative Studies.- Parallel Processing of the Evolving Tree Transformation System.- Computational Biology.- Computer-Based Analysis of Completely Sequenced Bacterial Genomes Reveals a Link Between Nucleotide Bias and Amino Acid Composition.- Virtual Enhancement of Combinatorial Libraries.- Bluejay: A Browser for Linear Units in Java.- High Level Applications.- The “Structured-Universe Approach” for Irregular and Dynamic Spatial Structures.- World Distribution Protocol for Support of Scalable General Purpose Distributed Virtual Environments.- A Programming System for Parallel Execution of Fortran Subprograms in Distributed Environment.- Condensed Graphs: A Multi-level, Parallel, Abstract Machine.- Object-Oriented Distributed and Parallel I/O Streams.- Parallelization of an Airline Flight-Scheduling Module on a Sci-Coupled NUMA Shared Memory Cluster.- Atmospheric Sciences.- Darwinian Evolution at RPN.- High-Resolution Weather Forecasting: A Teraflop Sustained on RISC/cache or Vector Processors.- High-Performance Modelling for the Mesoscale Alpine Programme (MAP) Field Experiment.- Climate Modelling at the University of Victoria.- Air Quality Prediction System.- On the Use of Coupled Atmospheric and Hydrologic Models at Regional Scale.- Algorithms.- A Note on Coarse Grained Parallel Integer Sorting.- Fast and Scalable Parallel Algorithms for Matrix Chain Product and Matrix Powers on Optical Buses.- An Efficient Transposition Algorithm for Distributed Memory Computers.- Tools.- Large Imagery Data Structuring Using Hierarchical Data Format for Parallel Computing and Visualization.- Shared Memory.- Cache Performance on Parallel Hash Join Algorithms.- Easy-Par: A Hybrid Environment Based on Message-Passing and Distributed Shared Memory.- A Preliminary DSM Speedup Comparison: JIAJIA X Nautilus.- Solvers.- A Parallel Direct 3D Elliptic Solver.- Reading Words Aloud: An Example of Retrieval from Semantic Memory.- Computing Numerical Distribution Functions in Econometrics.- Health.- High-Performance Computing for Computer-Aided Diagnosis of Breast Cancer.-Bioinformatics Challenges Facing Medical Research Professionals and the Tools to Face Them.- Computational Physics.- Monte Carlo Simulations of Polymers in Solution.- Monte Carlo Studies of the Self-Assembly of Amphiphilic Molecules.- Modeling Geometrical Heterogeneity in Biofilms.- General.- Experiences Using High-Level Programming for Parallel Cellular Computation.- A Parallel Analytical Solution of a Stochastic Combat Model.- Parallel Finite Element Simulation of 3D Mold-Filling Problems.- Poster Session.- Performance Analysis of Tape Libraries for Supercomputing Environments.- Network Parallel Computing for SOM Neural Networks.- Relaxation Phenomena of Ultra-Thin Magnetic Films.