Yeast Systems Biology

Yeast Systems Biology: The Challenge of Eukaryotic Complexity.- Saccharomyces cerevisiae: Gene Annotation and Genome Variability, State-of-the-Art Through Comparative Genomics.- Genome-Wide Measurement of Histone H3 Replacement Dynamics in Yeast.- Genome-Wide Approaches to Studying Yeast Chromatin Modifications.- Absolute and Relative Quantification of mRNA Expression (Transcript Analysis).- Enrichment of Unstable Non-Coding RNAs and Their Genome-Wide Identification.- Genome-Wide Transcriptome Analysis in Yeast Using High-Density Tiling Arrays.- RNA Sequencing.- Polyadenylation State Microarray (PASTA) Analysis.- Enabling Technologies for Yeast Proteome Analysis.- Protein Turnover Methods in Single-Celled Organisms: Dynamic SILAC.- Protein-Protein Interactions and Networks: Forward and Reverse Edgetics.- Use of Proteome Arrays to Globally Identify Substrates for E3 Ubiquitin Ligases.- Fit for Purpose Quenching and Extraction Protocols for Metabolic Profiling of Yeast Using Chromatography-Mass Spectrometry Platforms.- The Automated Cell: Compound and Environment Screening System (ACCESS) for Chemogenomic Screening.- Competition Experiments Coupled with High-Throughput Analyses for Functional Genomics Studies in Yeast.- Fluorescence Fluctuation Spectroscopy and Imaging Methods for Examination of Dynamic Protein Interactions in Yeast.- Nutritional Control of Cell Growth Via TOR Signaling in Budding Yeast.- Computational Yeast Systems Biology: A Case Study for the MAP Kinase Cascade.- Standards, Tools, and Databases for the Analysis of Yeast 'Omics Data.- A Computational Method to Search for DNA Structural Motifs in Functional Genomic Elements.- High Throughput Analyses and Curation of Protein Interactions in Yeast.- Noise in Biological Systems: Pros, Cons, and Mechanisms of Control.- Genome-Scale Integrative Data Analysis and Modeling of Dynamic Processes in Yeast.- Genome-Scale Metabolic Models of Saccharomyces cerevisiae.- Representation, Simulation, and Hypothesis Generation in Graph and Logical Models of Biological Networks.- Use of Genome-Scale Metabolic Models in Evolutionary Systems Biology.- Saccharomyces cerevisiae Contributions Towards Understanding Mammalian Gene Function and Therapy.