Data Mining for Systems Biology

Dense Module Enumeration in Biological Networks.-Discovering Interacting Domains and Motifs in Protein-Protein Interactions.-Global Alignment of Protein-Protein Interaction Networks.-Structure Learning for Bayesian Networks as Models of Biological Networks.-Supervised Inference of Gene Regulatory Networks from Positive and Unlabeled Examples.-Mining Regulatory Network Connections by Ranking Transcription Factor Target Genes using Time Series Expression Data.-Identifying Pathways of Co-ordinated Gene Expression.-Mining Frequent Subtrees in Glycan Data using the RINGS Glycan Miner Tool.-Chemogenomic Approaches to Infer drug-target interaction networks.-Localization Prediction and Structure-based in Silico Analysis of Bacterial Proteins- with Emphasis on Outer Membrane Proteins.-Analysis Strategy of Protein-Protein Interaction Networks.-Data Mining in the MetaCyc Family of Pathway Databases.-Gene Set/Pathway Enrichment Analysis.-Construction of Functional Linkage Gene Networks by Data Integration.-Genome-Wide Association Studies.-Viral Genome Analysis and Knowledge Management.-Molecular Network Analysis of Diseases and Drugs in KEG.